Wall clock time and date at job start Mon Mar 30 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47496 * 2 1 4 4 N 1.46904 * 109.47256 * 177.55483 * 3 2 1 5 5 C 1.46898 * 110.99885 * 64.86848 * 4 3 2 6 6 C 1.50693 * 109.47329 * 66.04494 * 5 4 3 7 7 H 1.08006 * 119.99857 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00255 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00094 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47018 * 270.00378 * 10 8 6 12 12 H 1.48503 * 109.47351 * 150.00308 * 10 8 6 13 13 H 1.48502 * 109.47293 * 30.00199 * 10 8 6 14 14 C 1.46905 * 110.99697 * 300.91131 * 4 3 2 15 15 H 1.09002 * 110.45154 * 67.53529 * 14 4 3 16 16 C 1.54503 * 110.50560 * 190.13569 * 14 4 3 17 17 C 1.54488 * 104.06123 * 118.64895 * 16 14 4 18 18 O 1.44427 * 104.80014 * 23.97708 * 17 16 14 19 19 C 1.44641 * 105.36991 * 319.56473 * 18 17 16 20 20 H 1.09000 * 109.47066 * 59.99660 * 1 2 3 21 21 H 1.08994 * 109.47132 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47073 * 300.00353 * 1 2 3 23 23 H 1.09001 * 109.47073 * 239.99647 * 2 1 3 24 24 H 1.09009 * 109.47187 * 119.99710 * 2 1 3 25 25 H 1.09000 * 109.46878 * 57.55077 * 3 2 1 26 26 H 1.08999 * 109.46899 * 297.55168 * 3 2 1 27 27 H 1.08999 * 109.46844 * 306.04021 * 5 4 3 28 28 H 1.08998 * 109.46555 * 186.04730 * 5 4 3 29 29 H 0.97009 * 119.99734 * 359.97438 * 9 8 6 30 30 H 1.09002 * 110.51254 * 237.28581 * 16 14 4 31 31 H 1.08996 * 110.51656 * 359.86914 * 16 14 4 32 32 H 1.08994 * 110.37293 * 142.80409 * 17 16 14 33 33 H 1.08995 * 110.36900 * 265.03730 * 17 16 14 34 34 H 1.08999 * 110.34435 * 281.59331 * 19 18 17 35 35 H 1.08997 * 110.50881 * 159.18613 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5079 1.4428 0.0591 5 6 4.0837 0.8429 -1.1519 6 6 3.7725 1.7147 -2.3411 7 1 3.2042 2.6238 -2.2102 8 6 4.2142 1.3523 -3.5959 9 7 4.9065 0.2456 -3.7552 10 14 3.8291 2.4333 -5.0699 11 1 2.5402 2.0078 -5.6725 12 1 4.9132 2.3026 -6.0764 13 1 3.7277 3.8488 -4.6326 14 6 3.9863 0.7552 1.2659 15 1 3.7607 -0.3098 1.2121 16 6 5.5040 0.9785 1.4503 17 6 5.6134 1.7133 2.8049 18 8 4.4111 1.3518 3.5188 19 6 3.3554 1.3791 2.5305 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 1.6413 1.9688 0.8672 26 1 1.7130 1.9435 -0.9111 27 1 3.6554 -0.1476 -1.3055 28 1 5.1642 0.7577 -1.0366 29 1 5.1068 -0.3156 -2.9896 30 1 6.0284 0.0238 1.4904 31 1 5.8997 1.5971 0.6449 32 1 6.4945 1.3750 3.3500 33 1 5.6548 2.7913 2.6494 34 1 3.0470 2.4059 2.3336 35 1 2.5051 0.7839 2.8634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388168830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:05 Heat of formation + Delta-G solvation = -54.310297 kcal Electronic energy + Delta-G solvation = -15098.661624 eV Core-core repulsion = 12710.274965 eV Total energy + Delta-G solvation = -2388.386659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42107 -36.79751 -33.14628 -32.38998 -30.20679 -28.59861 -26.33397 -24.64575 -22.61194 -22.04977 -21.27213 -18.94538 -16.62023 -16.35485 -16.09403 -14.97367 -14.48312 -14.21761 -13.96420 -13.67588 -13.31122 -12.73676 -12.30320 -12.00317 -11.63433 -11.39424 -11.22423 -11.04462 -10.92681 -10.78816 -10.65022 -10.48751 -10.17534 -10.08646 -9.94361 -9.53804 -8.66538 -8.38856 -7.33049 -6.38214 -4.06899 3.42302 3.46386 3.62097 4.17803 4.50225 4.80115 4.95496 5.16867 5.33690 5.36914 5.40648 5.44375 5.55227 5.60830 5.76725 5.93497 5.94465 5.99527 6.08383 6.17157 6.28080 6.28496 6.38052 6.42960 6.58442 6.79327 6.96862 7.05029 7.11612 7.78561 7.94882 8.30109 8.56818 8.85452 9.63284 11.00805 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.009647 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.485312 B = 2901.645010 C = 3543.774285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.162 4.162 3 C 0.062 3.938 4 N -0.520 5.520 5 C 0.179 3.821 6 C -0.586 4.586 7 H 0.057 0.943 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.073 2.927 11 H -0.289 1.289 12 H -0.285 1.285 13 H -0.288 1.288 14 C 0.048 3.952 15 H 0.045 0.955 16 C -0.148 4.148 17 C 0.051 3.949 18 O -0.385 6.385 19 C 0.054 3.946 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.085 0.915 27 H -0.014 1.014 28 H 0.021 0.979 29 H 0.266 0.734 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 1.142 9.567 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.066 4.066 4 N -0.244 5.244 5 C 0.053 3.947 6 C -0.624 4.624 7 H 0.075 0.925 8 C -0.189 4.189 9 N -0.552 5.552 10 Si 0.901 3.099 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.214 1.214 14 C -0.061 4.061 15 H 0.063 0.937 16 C -0.186 4.186 17 C -0.026 4.026 18 O -0.304 6.304 19 C -0.023 4.023 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.004 0.996 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.235 1.732 8.185 8.970 hybrid contribution -0.442 -1.075 1.329 1.766 sum -3.677 0.657 9.514 10.221 Atomic orbital electron populations 1.21656 0.96175 1.00855 1.01407 1.22179 0.95876 1.00213 1.01884 1.22127 0.88010 0.94513 1.01939 1.62432 1.06582 1.53405 1.01933 1.19894 0.94415 0.93480 0.86881 1.21969 1.38173 1.09622 0.92658 0.92521 1.25814 0.94238 0.98157 1.00735 1.70773 1.37028 1.12919 1.34439 0.83484 0.76355 0.74901 0.75139 1.21576 1.21059 1.21385 1.22928 0.94555 0.96586 0.92033 0.93673 1.22976 0.96218 1.01203 0.98190 1.23353 0.88185 0.98986 0.92101 1.89067 1.17864 1.90608 1.32839 1.23529 0.90564 1.00966 0.87268 0.92595 0.93495 0.93323 0.91133 0.93056 0.92687 0.89644 0.99611 0.96085 0.92343 0.91448 0.88943 0.89733 0.92231 0.91307 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.16 -2.83 5.28 -26.73 -0.14 -2.97 16 3 C 0.06 1.18 4.82 -3.82 -0.02 1.16 16 4 N -0.52 -10.88 4.48 -226.21 -1.01 -11.89 16 5 C 0.18 4.47 3.67 -4.98 -0.02 4.46 16 6 C -0.59 -16.22 8.44 -34.44 -0.29 -16.51 16 7 H 0.06 1.58 7.13 -52.48 -0.37 1.21 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.91 -27.55 13.65 55.43 0.76 -26.79 16 10 Si 1.07 25.16 29.90 -169.99 -5.08 20.07 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.05 0.88 2.14 -66.15 -0.14 0.74 16 15 H 0.05 0.85 6.72 -51.93 -0.35 0.50 16 16 C -0.15 -2.51 6.12 -25.16 -0.15 -2.66 16 17 C 0.05 0.75 7.64 37.94 0.29 1.04 16 18 O -0.39 -6.35 11.65 -35.23 -0.41 -6.76 16 19 C 0.05 0.86 6.06 37.93 0.23 1.09 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.07 1.44 6.51 -51.93 -0.34 1.10 16 24 H 0.05 0.85 6.44 -51.92 -0.33 0.52 16 25 H 0.05 0.91 6.67 -51.93 -0.35 0.56 16 26 H 0.09 1.79 6.74 -51.93 -0.35 1.44 16 27 H -0.01 -0.36 6.09 -51.93 -0.32 -0.68 16 28 H 0.02 0.56 6.44 -51.93 -0.33 0.23 16 29 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.74 6.99 -51.93 -0.36 1.38 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.11 7.41 -51.93 -0.38 0.72 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -29.67 271.90 -7.17 -36.84 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.54 Total: -0.52 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 0.03 Total: -15.04 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.26 Total: -38.69 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.41 Total: -6.76 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.67 -7.17 -36.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388168830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.474 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds