Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47496 * 2 1 4 4 N 1.46904 * 109.47256 * 177.55483 * 3 2 1 5 5 C 1.46898 * 110.99885 * 64.86848 * 4 3 2 6 6 C 1.50693 * 109.47329 * 66.04494 * 5 4 3 7 7 H 1.08006 * 119.99857 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00255 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00094 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47018 * 270.00378 * 10 8 6 12 12 H 1.48503 * 109.47351 * 150.00308 * 10 8 6 13 13 H 1.48502 * 109.47293 * 30.00199 * 10 8 6 14 14 C 1.46905 * 110.99697 * 300.91131 * 4 3 2 15 15 H 1.09002 * 110.45154 * 67.53529 * 14 4 3 16 16 C 1.54503 * 110.50560 * 190.13569 * 14 4 3 17 17 C 1.54488 * 104.06123 * 118.64895 * 16 14 4 18 18 O 1.44427 * 104.80014 * 23.97708 * 17 16 14 19 19 C 1.44641 * 105.36991 * 319.56473 * 18 17 16 20 20 H 1.09000 * 109.47066 * 59.99660 * 1 2 3 21 21 H 1.08994 * 109.47132 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47073 * 300.00353 * 1 2 3 23 23 H 1.09001 * 109.47073 * 239.99647 * 2 1 3 24 24 H 1.09009 * 109.47187 * 119.99710 * 2 1 3 25 25 H 1.09000 * 109.46878 * 57.55077 * 3 2 1 26 26 H 1.08999 * 109.46899 * 297.55168 * 3 2 1 27 27 H 1.08999 * 109.46844 * 306.04021 * 5 4 3 28 28 H 1.08998 * 109.46555 * 186.04730 * 5 4 3 29 29 H 0.97009 * 119.99734 * 359.97438 * 9 8 6 30 30 H 1.09002 * 110.51254 * 237.28581 * 16 14 4 31 31 H 1.08996 * 110.51656 * 359.86914 * 16 14 4 32 32 H 1.08994 * 110.37293 * 142.80409 * 17 16 14 33 33 H 1.08995 * 110.36900 * 265.03730 * 17 16 14 34 34 H 1.08999 * 110.34435 * 281.59331 * 19 18 17 35 35 H 1.08997 * 110.50881 * 159.18613 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5079 1.4428 0.0591 5 6 4.0837 0.8429 -1.1519 6 6 3.7725 1.7147 -2.3411 7 1 3.2042 2.6238 -2.2102 8 6 4.2142 1.3523 -3.5959 9 7 4.9065 0.2456 -3.7552 10 14 3.8291 2.4333 -5.0699 11 1 2.5402 2.0078 -5.6725 12 1 4.9132 2.3026 -6.0764 13 1 3.7277 3.8488 -4.6326 14 6 3.9863 0.7552 1.2659 15 1 3.7607 -0.3098 1.2121 16 6 5.5040 0.9785 1.4503 17 6 5.6134 1.7133 2.8049 18 8 4.4111 1.3518 3.5188 19 6 3.3554 1.3791 2.5305 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 1.6413 1.9688 0.8672 26 1 1.7130 1.9435 -0.9111 27 1 3.6554 -0.1476 -1.3055 28 1 5.1642 0.7577 -1.0366 29 1 5.1068 -0.3156 -2.9896 30 1 6.0284 0.0238 1.4904 31 1 5.8997 1.5971 0.6449 32 1 6.4945 1.3750 3.3500 33 1 5.6548 2.7913 2.6494 34 1 3.0470 2.4059 2.3336 35 1 2.5051 0.7839 2.8634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388168830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -74.540010 kcal Electronic energy + Delta-G solvation = -15099.538850 eV Core-core repulsion = 12710.274965 eV Total energy + Delta-G solvation = -2389.263885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83243 -38.32491 -35.16003 -33.87943 -31.64478 -30.12582 -28.01003 -26.40766 -24.16402 -23.66087 -22.68854 -20.50827 -18.69615 -17.77696 -17.50957 -16.32623 -16.02201 -15.77398 -15.58974 -15.38753 -14.82074 -14.19707 -13.89905 -13.61804 -13.30173 -12.88715 -12.74433 -12.62632 -12.52190 -12.29322 -12.12475 -12.00277 -11.93162 -11.65340 -11.45002 -10.86314 -10.68920 -10.56076 -9.05894 -8.66135 -6.36019 1.52222 1.61069 1.79000 2.54752 2.87510 3.15746 3.25343 3.59667 3.86288 3.98289 4.05810 4.08933 4.25118 4.28718 4.43136 4.56991 4.67483 4.73232 4.77934 4.78228 4.91350 4.92040 4.96916 5.01411 5.05067 5.18613 5.28439 5.38546 5.66938 5.84509 6.00920 6.39114 6.44241 6.65707 7.43306 8.72448 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.009647 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.485312 B = 2901.645010 C = 3543.774285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.062 3.938 4 N -0.527 5.527 5 C 0.194 3.806 6 C -0.592 4.592 7 H 0.053 0.947 8 C -0.037 4.037 9 N -0.940 5.940 10 Si 1.120 2.880 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.043 3.957 15 H 0.038 0.962 16 C -0.150 4.150 17 C 0.056 3.944 18 O -0.391 6.391 19 C 0.063 3.937 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.060 0.940 27 H -0.036 1.036 28 H 0.001 0.999 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 2.046 10.786 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.066 4.066 4 N -0.250 5.250 5 C 0.067 3.933 6 C -0.631 4.631 7 H 0.071 0.929 8 C -0.235 4.235 9 N -0.578 5.578 10 Si 0.941 3.059 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.195 1.195 14 C -0.066 4.066 15 H 0.056 0.944 16 C -0.188 4.188 17 C -0.020 4.020 18 O -0.310 6.310 19 C -0.014 4.014 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.079 0.921 27 H -0.018 1.018 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.306 2.638 9.439 10.705 hybrid contribution -0.099 -1.372 1.016 1.711 sum -4.406 1.266 10.456 11.416 Atomic orbital electron populations 1.21619 0.93415 1.02067 1.02390 1.22067 0.98256 0.98708 1.00346 1.22168 0.86738 0.95564 1.02098 1.62340 1.07975 1.53376 1.01346 1.19536 0.93174 0.92195 0.88358 1.22274 1.37455 1.09554 0.93770 0.92889 1.27308 0.93504 0.98544 1.04097 1.70904 1.38953 1.14061 1.33847 0.82892 0.76733 0.74154 0.72092 1.19957 1.20977 1.19487 1.23037 0.95604 0.96157 0.91801 0.94424 1.22974 0.95498 1.01436 0.98931 1.23427 0.88709 0.99099 0.90792 1.89068 1.18296 1.90675 1.32918 1.23491 0.90900 1.01174 0.85830 0.93119 0.92236 0.90801 0.95189 0.92048 0.89477 0.92137 1.01838 0.98128 0.93812 0.90907 0.91396 0.87002 0.91616 0.91071 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.15 -5.30 5.28 30.59 0.16 -5.14 16 3 C 0.06 2.29 4.82 86.30 0.42 2.71 16 4 N -0.53 -22.14 4.48 -869.59 -3.89 -26.04 16 5 C 0.19 10.07 3.67 85.56 0.31 10.38 16 6 C -0.59 -33.50 8.44 25.60 0.22 -33.28 16 7 H 0.05 2.98 7.13 -2.91 -0.02 2.96 16 8 C -0.04 -2.15 5.46 84.65 0.46 -1.69 16 9 N -0.94 -58.09 13.65 21.45 0.29 -57.79 16 10 Si 1.12 50.53 29.90 68.60 2.05 52.58 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 C 0.04 1.53 2.14 45.93 0.10 1.63 16 15 H 0.04 1.40 6.72 -2.39 -0.02 1.38 16 16 C -0.15 -5.04 6.12 31.61 0.19 -4.84 16 17 C 0.06 1.54 7.64 72.49 0.55 2.09 16 18 O -0.39 -11.77 11.65 -148.98 -1.74 -13.51 16 19 C 0.06 1.85 6.06 72.48 0.44 2.29 16 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.03 1.25 6.51 -2.39 -0.02 1.24 16 24 H 0.06 1.96 6.44 -2.38 -0.02 1.94 16 25 H 0.09 2.66 6.67 -2.39 -0.02 2.65 16 26 H 0.06 2.53 6.74 -2.39 -0.02 2.51 16 27 H -0.04 -2.00 6.09 -2.39 -0.01 -2.02 16 28 H 0.00 0.04 6.44 -2.39 -0.02 0.03 16 29 H 0.25 15.86 7.22 -92.70 -0.67 15.19 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.61 6.99 -2.39 -0.02 2.60 16 32 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.08 7.41 -2.39 -0.02 2.06 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -64.55 271.90 1.43 -63.11 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.15 Total: 10.43 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.57 Total: -28.79 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.60 Total: -83.83 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.74 Total: -13.51 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -64.55 1.43 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388168830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.426 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds