Wall clock time and date at job start Mon Mar 30 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47364 * 2 1 4 4 N 1.46899 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99961 * 190.00061 * 4 3 2 6 6 C 1.50702 * 109.46886 * 163.88422 * 5 4 3 7 7 H 1.07998 * 120.00010 * 354.31241 * 6 5 4 8 8 C 1.37882 * 119.99969 * 174.31722 * 6 5 4 9 9 N 1.31522 * 119.99794 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00093 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47031 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46762 * 119.99973 * 10 8 6 13 13 H 1.48499 * 109.47019 * 240.00121 * 10 8 6 14 14 C 1.46905 * 110.99789 * 66.04777 * 4 3 2 15 15 H 1.08993 * 110.80130 * 337.20938 * 14 4 3 16 16 C 1.54816 * 110.90475 * 213.58126 * 14 4 3 17 17 C 1.54100 * 104.18755 * 220.92131 * 16 14 4 18 18 O 1.43753 * 107.29123 * 357.97091 * 17 16 14 19 19 C 1.44374 * 106.97708 * 26.51566 * 18 17 16 20 20 H 1.08997 * 109.47613 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46873 * 300.00024 * 1 2 3 22 22 H 1.09002 * 109.47251 * 59.99507 * 1 2 3 23 23 H 1.09004 * 109.46873 * 239.99975 * 2 1 3 24 24 H 1.08999 * 109.46760 * 120.00522 * 2 1 3 25 25 H 1.09004 * 109.47145 * 60.00142 * 3 2 1 26 26 H 1.09002 * 109.47339 * 300.00439 * 3 2 1 27 27 H 1.08996 * 109.47102 * 43.88144 * 5 4 3 28 28 H 1.09004 * 109.47035 * 283.87958 * 5 4 3 29 29 H 0.96997 * 119.99719 * 179.97438 * 9 8 6 30 30 H 1.09000 * 110.48827 * 339.59934 * 16 14 4 31 31 H 1.08994 * 110.48522 * 102.11219 * 16 14 4 32 32 H 1.08999 * 109.88174 * 117.39317 * 17 16 14 33 33 H 1.08996 * 109.88190 * 238.54918 * 17 16 14 34 34 H 1.09000 * 110.61884 * 201.43762 * 19 18 17 35 35 H 1.09005 * 110.62168 * 78.43773 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0354 2.7930 0.2388 6 6 5.4896 2.7046 0.6243 7 1 5.9503 1.7396 0.7759 8 6 6.2318 3.8556 0.7837 9 7 5.6707 5.0307 0.5987 10 14 8.0341 3.7461 1.2622 11 1 8.4216 2.3200 1.4087 12 1 8.8657 4.3786 0.2070 13 1 8.2479 4.4525 2.5508 14 6 4.0359 0.8854 -1.2525 15 1 3.2978 0.2413 -1.7303 16 6 5.3586 0.1202 -1.0038 17 6 6.2518 0.5123 -2.1968 18 8 5.4745 1.3706 -3.0486 19 6 4.4897 2.0148 -2.2122 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.4737 3.2648 1.0450 28 1 3.9358 3.3872 -0.6696 29 1 6.1927 5.8404 0.7112 30 1 5.8132 0.4390 -0.0658 31 1 5.1813 -0.9552 -0.9945 32 1 7.1339 1.0441 -1.8404 33 1 6.5513 -0.3810 -2.7449 34 1 3.6508 2.3699 -2.8108 35 1 4.9386 2.8360 -1.6534 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388168831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:06 Heat of formation + Delta-G solvation = -55.178727 kcal Electronic energy + Delta-G solvation = -15278.885996 eV Core-core repulsion = 12890.461679 eV Total energy + Delta-G solvation = -2388.424317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79229 -37.84605 -35.12991 -33.80338 -31.76814 -29.39986 -29.18029 -25.85166 -24.68310 -22.83057 -22.30874 -20.55863 -18.60942 -17.46647 -17.33652 -16.60883 -16.07935 -15.71615 -15.59688 -14.84832 -14.43115 -14.20623 -13.94324 -13.33631 -13.18382 -13.06461 -12.78564 -12.44467 -12.36926 -12.29036 -12.15176 -11.95457 -11.78771 -11.60365 -11.16230 -10.83503 -10.56209 -10.44159 -8.90370 -8.16102 -6.23242 1.39316 1.41415 1.52281 2.40649 2.91521 3.17195 3.50702 3.85607 3.92027 4.10625 4.23146 4.27070 4.42559 4.48394 4.59604 4.67395 4.77402 4.85441 4.90913 4.99492 5.02149 5.14452 5.20223 5.23658 5.34272 5.36331 5.39217 5.50166 5.81826 5.94968 6.15104 6.37349 6.66776 6.93867 7.45271 8.94101 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.011025 C = 0.009041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.483339 B = 2538.958612 C = 3096.243631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.051 3.949 4 N -0.531 5.531 5 C 0.193 3.807 6 C -0.506 4.506 7 H 0.075 0.925 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.952 3.048 11 H -0.259 1.259 12 H -0.285 1.285 13 H -0.282 1.282 14 C 0.069 3.931 15 H 0.096 0.904 16 C -0.144 4.144 17 C 0.049 3.951 18 O -0.401 6.401 19 C 0.009 3.991 20 H 0.070 0.930 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.021 0.979 27 H -0.004 1.004 28 H -0.008 1.008 29 H 0.261 0.739 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -10.384 -3.030 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.077 4.077 4 N -0.255 5.255 5 C 0.067 3.933 6 C -0.544 4.544 7 H 0.093 0.907 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.778 3.222 11 H -0.183 1.183 12 H -0.211 1.211 13 H -0.208 1.208 14 C -0.041 4.041 15 H 0.113 0.887 16 C -0.182 4.182 17 C -0.027 4.027 18 O -0.320 6.320 19 C -0.068 4.068 20 H 0.089 0.911 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.694 -10.481 -2.859 11.835 hybrid contribution 0.635 1.268 -0.075 1.420 sum -4.059 -9.213 -2.935 10.487 Atomic orbital electron populations 1.21704 0.94216 1.02454 1.01857 1.21504 0.96378 0.94759 1.02304 1.22242 0.87653 0.98188 0.99640 1.62159 1.06740 1.24313 1.32300 1.19701 0.94906 0.84548 0.94117 1.21627 0.95214 0.92840 1.44738 0.90724 1.25786 1.02581 0.95146 0.95891 1.70080 1.37930 0.98024 1.51451 0.85578 0.80306 0.78738 0.77600 1.18295 1.21106 1.20796 1.23085 0.97099 0.95077 0.88806 0.88652 1.23072 0.95057 1.00625 0.99476 1.23194 0.94067 0.93949 0.91524 1.88693 1.48818 1.61016 1.33494 1.24477 0.91653 0.97894 0.92804 0.91111 0.92716 0.92732 0.91804 0.91735 0.92173 0.96048 0.98605 0.99083 0.93037 0.90176 0.89092 0.94096 0.87715 0.90505 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.11 -2.97 5.91 30.59 0.18 -2.78 16 3 C 0.05 1.75 4.89 86.30 0.42 2.17 16 4 N -0.53 -21.86 4.40 -867.91 -3.82 -25.68 16 5 C 0.19 9.83 4.27 85.56 0.37 10.20 16 6 C -0.51 -27.21 7.29 25.60 0.19 -27.03 16 7 H 0.07 3.92 5.04 -2.91 -0.01 3.90 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 10 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 C 0.07 2.56 2.98 46.22 0.14 2.70 16 15 H 0.10 3.10 5.98 -2.39 -0.01 3.08 16 16 C -0.14 -5.07 6.29 31.59 0.20 -4.87 16 17 C 0.05 1.73 7.70 72.35 0.56 2.28 16 18 O -0.40 -16.29 11.52 -148.98 -1.72 -18.01 16 19 C 0.01 0.38 6.14 72.67 0.45 0.83 16 20 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.62 6.36 -2.39 -0.02 1.61 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 26 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 27 H 0.00 -0.23 7.80 -2.39 -0.02 -0.25 16 28 H -0.01 -0.45 5.49 -2.38 -0.01 -0.47 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.08 3.25 5.00 -2.39 -0.01 3.24 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.08 3.81 4.46 -2.38 -0.01 3.80 16 Total: -1.00 -60.77 270.45 1.50 -59.27 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.06 Total: 11.70 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.67 Total: -18.16 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -3.54 Total: -80.69 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.72 Total: -18.01 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.77 1.50 -59.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388168831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.088 kcal (2) G-P(sol) polarization free energy of solvation -60.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds