Wall clock time and date at job start Mon Mar 30 2020 04:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.53583 * 2 1 4 4 C 1.54888 * 110.48621 * 237.38098 * 2 1 3 5 5 C 1.54886 * 102.74842 * 203.37640 * 4 2 1 6 6 C 1.54266 * 104.19632 * 37.94588 * 5 4 2 7 7 H 1.09001 * 110.03294 * 95.67094 * 6 5 4 8 8 N 1.46500 * 110.03629 * 217.05674 * 6 5 4 9 9 C 1.36940 * 119.99885 * 58.54235 * 8 6 5 10 10 H 1.07992 * 120.00042 * 326.34574 * 9 8 6 11 11 C 1.38810 * 119.99596 * 146.34285 * 9 8 6 12 12 N 1.31618 * 120.00505 * 337.48399 * 11 9 8 13 13 Si 1.86806 * 119.99802 * 157.47866 * 11 9 8 14 14 H 1.48498 * 109.46872 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46935 * 119.99868 * 13 11 9 16 16 H 1.48493 * 109.47633 * 240.00557 * 13 11 9 17 17 C 1.46503 * 119.99882 * 238.54656 * 8 6 5 18 18 C 1.52998 * 109.46871 * 84.44732 * 17 8 6 19 19 O 1.42899 * 109.47403 * 65.00229 * 18 17 8 20 20 C 1.53879 * 106.59643 * 336.38813 * 6 5 4 21 21 H 1.09011 * 109.47043 * 181.16321 * 1 2 3 22 22 H 1.08990 * 109.47314 * 301.16079 * 1 2 3 23 23 H 1.08997 * 109.47150 * 61.17032 * 1 2 3 24 24 H 1.09007 * 110.75228 * 85.06817 * 4 2 1 25 25 H 1.09001 * 110.75982 * 321.69407 * 4 2 1 26 26 H 1.08998 * 110.48860 * 156.62364 * 5 4 2 27 27 H 1.09004 * 110.49136 * 279.13521 * 5 4 2 28 28 H 0.96996 * 119.99841 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46766 * 204.44499 * 17 8 6 30 30 H 1.09000 * 109.46989 * 324.44242 * 17 8 6 31 31 H 1.09009 * 109.46674 * 184.99478 * 18 17 8 32 32 H 1.08998 * 109.47025 * 304.99425 * 18 17 8 33 33 H 0.96695 * 114.00029 * 179.97438 * 19 18 17 34 34 H 1.09002 * 110.03121 * 119.28505 * 20 6 5 35 35 H 1.09000 * 110.03511 * 240.71142 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7821 -1.2221 5 6 3.4907 -1.1980 -0.7599 6 6 3.3166 -1.5404 0.7342 7 1 3.1693 -2.6135 0.8566 8 7 4.4948 -1.1067 1.4892 9 6 4.8693 0.2105 1.4766 10 1 4.7152 0.8072 0.5897 11 6 5.4469 0.7785 2.6037 12 7 5.2456 0.2411 3.7882 13 14 6.5100 2.3058 2.4395 14 1 6.5784 2.7100 1.0122 15 1 5.9181 3.4091 3.2381 16 1 7.8779 2.0127 2.9375 17 6 5.2723 -2.0820 2.2575 18 6 6.2823 -2.7687 1.3360 19 8 7.2334 -1.8084 0.8719 20 6 2.0699 -0.7787 1.2173 21 1 -0.3634 -1.0276 0.0209 22 1 -0.3633 0.5317 0.8793 23 1 -0.3633 0.4955 -0.9003 24 1 2.1252 -0.1383 -2.1001 25 1 1.4581 -1.6602 -1.4221 26 1 3.8316 -2.0722 -1.3144 27 1 4.1903 -0.3714 -0.8848 28 1 5.6496 0.6380 4.5758 29 1 5.8025 -1.5716 3.0616 30 1 4.6010 -2.8288 2.6816 31 1 6.7992 -3.5555 1.8857 32 1 5.7597 -3.2037 0.4841 33 1 7.9060 -2.1746 0.2816 34 1 1.3176 -1.4821 1.5742 35 1 2.3411 -0.0856 2.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388801670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:46 Heat of formation + Delta-G solvation = -43.099244 kcal Electronic energy + Delta-G solvation = -15339.199341 eV Core-core repulsion = 12951.298830 eV Total energy + Delta-G solvation = -2387.900511 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.04420 -36.05775 -34.11430 -31.25988 -29.82498 -28.18081 -26.74470 -24.44350 -23.20078 -20.63411 -19.62389 -18.73015 -16.53560 -16.19953 -15.26357 -14.59431 -14.15387 -13.75514 -13.40588 -12.91601 -12.73540 -12.42225 -12.20178 -11.64814 -11.45504 -10.93767 -10.81060 -10.63814 -10.32254 -10.20522 -10.12345 -10.03423 -9.92207 -9.73982 -9.54400 -9.32139 -9.01391 -8.26680 -6.42805 -5.61703 -3.10804 3.49470 3.57259 3.60708 4.65137 5.27588 5.30608 5.38101 5.43089 5.56258 5.66661 5.89913 6.03490 6.13104 6.14696 6.23970 6.27024 6.35617 6.44850 6.51714 6.58913 6.63848 6.72638 6.80105 6.86977 6.97711 7.14258 7.25517 7.45569 7.80410 8.00274 8.53459 8.72533 9.36578 10.02709 10.55915 11.41039 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.012604 C = 0.010108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.990907 B = 2220.917453 C = 2769.429938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.170 3.830 7 H 0.044 0.956 8 N -0.572 5.572 9 C -0.224 4.224 10 H 0.059 0.941 11 C 0.009 3.991 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.291 1.291 17 C 0.139 3.861 18 C 0.060 3.940 19 O -0.544 6.544 20 C -0.126 4.126 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.108 0.892 30 H 0.034 0.966 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.348 0.652 34 H 0.041 0.959 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 -4.639 -6.578 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.173 4.173 6 C 0.062 3.938 7 H 0.063 0.937 8 N -0.291 5.291 9 C -0.353 4.353 10 H 0.076 0.924 11 C -0.189 4.189 12 N -0.542 5.542 13 Si 0.727 3.273 14 H -0.204 1.204 15 H -0.223 1.223 16 H -0.218 1.218 17 C 0.012 3.988 18 C -0.020 4.020 19 O -0.345 6.345 20 C -0.166 4.166 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.191 0.809 34 H 0.059 0.941 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.089 -4.181 -6.020 8.393 hybrid contribution 0.971 0.259 -0.408 1.084 sum -3.118 -3.922 -6.428 8.150 Atomic orbital electron populations 1.21798 0.96431 1.00872 1.00611 1.21888 0.93799 0.99755 0.95838 0.91122 1.22494 0.97226 0.98797 0.97026 1.22807 0.95878 1.00709 0.97917 1.21018 0.87372 0.95002 0.90384 0.93721 1.43858 1.25219 1.04590 1.55416 1.18818 1.34670 0.86493 0.95345 0.92355 1.24930 1.01615 0.97658 0.94747 1.69980 1.45038 1.42015 0.97153 0.86334 0.80862 0.82748 0.77385 1.20408 1.22349 1.21757 1.21070 0.91520 0.91301 0.94927 1.23103 0.91249 0.90645 0.97043 1.86850 1.42647 1.37284 1.67723 1.22663 0.96831 0.99160 0.97905 0.93289 0.93177 0.93673 0.93028 0.92684 0.93824 0.90616 0.94018 0.87436 0.94792 0.96394 0.96110 0.80916 0.94061 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.12 37.16 0.34 -1.68 16 2 C -0.09 -1.64 3.46 -88.96 -0.31 -1.95 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.12 -1.92 6.33 -24.74 -0.16 -2.08 16 5 C -0.13 -2.56 6.40 -25.07 -0.16 -2.72 16 6 C 0.17 3.59 3.42 -66.81 -0.23 3.37 16 7 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 8 N -0.57 -14.16 2.36 -164.39 -0.39 -14.55 16 9 C -0.22 -6.13 7.76 -15.06 -0.12 -6.24 16 10 H 0.06 1.63 6.74 -52.49 -0.35 1.28 16 11 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 12 N -0.90 -26.31 11.34 55.49 0.63 -25.69 16 13 Si 0.90 22.79 29.61 -169.99 -5.03 17.76 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 17 C 0.14 3.32 5.58 -4.04 -0.02 3.30 16 18 C 0.06 1.22 7.39 37.16 0.27 1.50 16 19 O -0.54 -11.79 13.40 -35.23 -0.47 -12.26 16 20 C -0.13 -2.55 5.84 -25.61 -0.15 -2.70 16 21 H 0.05 0.66 8.11 -51.92 -0.42 0.24 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.64 6.40 -51.93 -0.33 1.31 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.11 2.98 5.34 -51.93 -0.28 2.70 16 30 H 0.03 0.76 8.05 -51.93 -0.42 0.35 16 31 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.35 5.52 9.12 45.56 0.42 5.94 16 34 H 0.04 0.77 7.81 -51.93 -0.41 0.36 16 35 H 0.08 2.02 7.32 -51.93 -0.38 1.64 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -30.20 278.39 -6.78 -36.98 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.10 Total: 2.62 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.61 Total: -9.06 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.24 Total: -40.24 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.47 Total: -12.26 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.20 -6.78 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388801670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.116 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds