Wall clock time and date at job start Mon Mar 30 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.53583 * 2 1 4 4 C 1.54888 * 110.48621 * 237.38098 * 2 1 3 5 5 C 1.54886 * 102.74842 * 203.37640 * 4 2 1 6 6 C 1.54266 * 104.19632 * 37.94588 * 5 4 2 7 7 H 1.09001 * 110.03294 * 95.67094 * 6 5 4 8 8 N 1.46500 * 110.03629 * 217.05674 * 6 5 4 9 9 C 1.36940 * 119.99885 * 58.54235 * 8 6 5 10 10 H 1.07992 * 120.00042 * 326.34574 * 9 8 6 11 11 C 1.38810 * 119.99596 * 146.34285 * 9 8 6 12 12 N 1.31618 * 120.00505 * 337.48399 * 11 9 8 13 13 Si 1.86806 * 119.99802 * 157.47866 * 11 9 8 14 14 H 1.48498 * 109.46872 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46935 * 119.99868 * 13 11 9 16 16 H 1.48493 * 109.47633 * 240.00557 * 13 11 9 17 17 C 1.46503 * 119.99882 * 238.54656 * 8 6 5 18 18 C 1.52998 * 109.46871 * 84.44732 * 17 8 6 19 19 O 1.42899 * 109.47403 * 65.00229 * 18 17 8 20 20 C 1.53879 * 106.59643 * 336.38813 * 6 5 4 21 21 H 1.09011 * 109.47043 * 181.16321 * 1 2 3 22 22 H 1.08990 * 109.47314 * 301.16079 * 1 2 3 23 23 H 1.08997 * 109.47150 * 61.17032 * 1 2 3 24 24 H 1.09007 * 110.75228 * 85.06817 * 4 2 1 25 25 H 1.09001 * 110.75982 * 321.69407 * 4 2 1 26 26 H 1.08998 * 110.48860 * 156.62364 * 5 4 2 27 27 H 1.09004 * 110.49136 * 279.13521 * 5 4 2 28 28 H 0.96996 * 119.99841 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46766 * 204.44499 * 17 8 6 30 30 H 1.09000 * 109.46989 * 324.44242 * 17 8 6 31 31 H 1.09009 * 109.46674 * 184.99478 * 18 17 8 32 32 H 1.08998 * 109.47025 * 304.99425 * 18 17 8 33 33 H 0.96695 * 114.00029 * 179.97438 * 19 18 17 34 34 H 1.09002 * 110.03121 * 119.28505 * 20 6 5 35 35 H 1.09000 * 110.03511 * 240.71142 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7821 -1.2221 5 6 3.4907 -1.1980 -0.7599 6 6 3.3166 -1.5404 0.7342 7 1 3.1693 -2.6135 0.8566 8 7 4.4948 -1.1067 1.4892 9 6 4.8693 0.2105 1.4766 10 1 4.7152 0.8072 0.5897 11 6 5.4469 0.7785 2.6037 12 7 5.2456 0.2411 3.7882 13 14 6.5100 2.3058 2.4395 14 1 6.5784 2.7100 1.0122 15 1 5.9181 3.4091 3.2381 16 1 7.8779 2.0127 2.9375 17 6 5.2723 -2.0820 2.2575 18 6 6.2823 -2.7687 1.3360 19 8 7.2334 -1.8084 0.8719 20 6 2.0699 -0.7787 1.2173 21 1 -0.3634 -1.0276 0.0209 22 1 -0.3633 0.5317 0.8793 23 1 -0.3633 0.4955 -0.9003 24 1 2.1252 -0.1383 -2.1001 25 1 1.4581 -1.6602 -1.4221 26 1 3.8316 -2.0722 -1.3144 27 1 4.1903 -0.3714 -0.8848 28 1 5.6496 0.6380 4.5758 29 1 5.8025 -1.5716 3.0616 30 1 4.6010 -2.8288 2.6816 31 1 6.7992 -3.5555 1.8857 32 1 5.7597 -3.2037 0.4841 33 1 7.9060 -2.1746 0.2816 34 1 1.3176 -1.4821 1.5742 35 1 2.3411 -0.0856 2.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388801670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:45 Heat of formation + Delta-G solvation = -63.265871 kcal Electronic energy + Delta-G solvation = -15340.073832 eV Core-core repulsion = 12951.298830 eV Total energy + Delta-G solvation = -2388.775002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.66092 -37.70193 -35.91290 -33.19793 -31.36164 -29.83138 -28.52674 -26.10305 -24.87939 -22.41718 -21.18160 -20.34716 -18.24160 -18.10584 -16.95846 -16.49575 -15.91776 -15.27703 -15.13344 -14.52448 -14.27377 -14.09334 -13.63728 -13.38728 -12.96680 -12.86226 -12.63718 -12.51539 -12.07742 -11.96963 -11.73713 -11.62837 -11.50944 -11.34322 -11.16947 -11.03758 -10.64825 -10.35129 -8.44945 -7.71931 -5.23411 1.43654 1.47818 1.56092 2.58316 3.36855 3.62247 3.82728 3.96261 3.98000 4.20591 4.54693 4.60127 4.66357 4.74325 4.77026 4.85637 4.88204 4.95848 4.97747 5.08407 5.14020 5.20332 5.29666 5.32365 5.47433 5.62813 5.70200 5.71246 5.79976 5.90947 6.57396 7.20872 7.30627 8.03453 8.50049 9.26449 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.012604 C = 0.010108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.990907 B = 2220.917453 C = 2769.429938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.046 0.954 4 C -0.105 4.105 5 C -0.127 4.127 6 C 0.159 3.841 7 H 0.058 0.942 8 N -0.585 5.585 9 C -0.211 4.211 10 H 0.047 0.953 11 C -0.043 4.043 12 N -0.925 5.925 13 Si 0.945 3.055 14 H -0.274 1.274 15 H -0.296 1.296 16 H -0.297 1.297 17 C 0.131 3.869 18 C 0.070 3.930 19 O -0.576 6.576 20 C -0.122 4.122 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.244 0.756 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.374 0.626 34 H 0.057 0.943 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -5.685 -8.480 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 H 0.065 0.935 4 C -0.143 4.143 5 C -0.166 4.166 6 C 0.053 3.947 7 H 0.077 0.923 8 N -0.305 5.305 9 C -0.342 4.342 10 H 0.065 0.935 11 C -0.237 4.237 12 N -0.573 5.573 13 Si 0.775 3.225 14 H -0.199 1.199 15 H -0.224 1.224 16 H -0.224 1.224 17 C 0.005 3.995 18 C -0.010 4.010 19 O -0.381 6.381 20 C -0.161 4.161 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.221 0.779 34 H 0.076 0.924 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.958 -5.242 -7.958 10.742 hybrid contribution 1.228 0.523 0.155 1.344 sum -3.731 -4.719 -7.802 9.852 Atomic orbital electron populations 1.21732 0.93652 1.02102 1.01528 1.21849 0.96115 0.98155 0.95086 0.93510 1.22453 0.95347 0.99799 0.96685 1.22676 0.97177 1.00230 0.96562 1.21292 0.86355 0.95843 0.91217 0.92326 1.44026 1.26743 1.03910 1.55777 1.18853 1.33333 0.87592 0.94407 0.93499 1.25475 1.03391 1.00131 0.94753 1.70098 1.46377 1.43351 0.97425 0.85548 0.79156 0.80460 0.77302 1.19879 1.22351 1.22392 1.21041 0.92376 0.91186 0.94919 1.22864 0.90702 0.90311 0.97097 1.86764 1.43765 1.38802 1.68734 1.22552 0.97173 0.98670 0.97699 0.91796 0.93556 0.91629 0.91469 0.90044 0.92085 0.93760 0.94648 0.91221 0.93997 0.93661 0.94452 0.77942 0.92419 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.12 71.98 0.66 -2.79 16 2 C -0.09 -3.11 3.46 -9.72 -0.03 -3.14 16 3 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.11 -3.10 6.33 31.88 0.20 -2.89 16 5 C -0.13 -4.61 6.40 31.67 0.20 -4.41 16 6 C 0.16 6.57 3.42 45.72 0.16 6.72 16 7 H 0.06 2.23 7.90 -2.39 -0.02 2.21 16 8 N -0.58 -29.08 2.36 -674.01 -1.59 -30.67 16 9 C -0.21 -11.78 7.76 84.03 0.65 -11.13 16 10 H 0.05 2.70 6.74 -2.91 -0.02 2.68 16 11 C -0.04 -2.47 4.91 84.86 0.42 -2.05 16 12 N -0.93 -56.06 11.34 21.65 0.25 -55.81 16 13 Si 0.94 47.89 29.61 68.60 2.03 49.92 16 14 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 16 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 17 C 0.13 6.29 5.58 86.38 0.48 6.77 16 18 C 0.07 2.73 7.39 71.98 0.53 3.26 16 19 O -0.58 -24.21 13.40 -148.98 -2.00 -26.21 16 20 C -0.12 -4.86 5.84 31.32 0.18 -4.67 16 21 H 0.06 1.48 8.11 -2.38 -0.02 1.46 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 1.88 6.40 -2.39 -0.02 1.87 16 28 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.07 3.95 5.34 -2.39 -0.01 3.94 16 30 H 0.04 1.88 8.05 -2.39 -0.02 1.86 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.37 11.11 9.12 -74.06 -0.68 10.43 16 34 H 0.06 2.06 7.81 -2.39 -0.02 2.05 16 35 H 0.03 1.70 7.32 -2.39 -0.02 1.68 16 Total: -1.00 -66.22 278.39 2.52 -63.70 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.38 Total: 13.40 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 3.45 Total: -14.32 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -1.34 Total: -86.49 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -2.00 Total: -26.21 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -66.22 2.52 -63.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388801670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.430 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds