Wall clock time and date at job start Mon Mar 30 2020 04:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 110.43600 * 2 1 4 4 C 1.54893 * 110.48910 * 122.54452 * 2 1 3 5 5 C 1.54882 * 102.75177 * 156.75187 * 4 2 1 6 6 C 1.54277 * 104.19616 * 322.05800 * 5 4 2 7 7 H 1.08999 * 110.02715 * 264.28118 * 6 5 4 8 8 N 1.46501 * 110.03228 * 142.89434 * 6 5 4 9 9 C 1.36932 * 119.99976 * 302.09223 * 8 6 5 10 10 H 1.08005 * 120.00368 * 32.35116 * 9 8 6 11 11 C 1.38811 * 119.99850 * 212.35716 * 9 8 6 12 12 N 1.31619 * 120.00334 * 28.89721 * 11 9 8 13 13 Si 1.86803 * 119.99851 * 208.89786 * 11 9 8 14 14 H 1.48499 * 109.46874 * 179.97438 * 13 11 9 15 15 H 1.48490 * 109.47309 * 300.00172 * 13 11 9 16 16 H 1.48505 * 109.46895 * 60.00312 * 13 11 9 17 17 C 1.46496 * 119.99919 * 122.09472 * 8 6 5 18 18 C 1.53001 * 109.46847 * 275.24039 * 17 8 6 19 19 O 1.42898 * 109.47254 * 65.00042 * 18 17 8 20 20 C 1.53872 * 106.63854 * 23.58427 * 6 5 4 21 21 H 1.09001 * 109.47108 * 298.91098 * 1 2 3 22 22 H 1.08996 * 109.47285 * 58.91137 * 1 2 3 23 23 H 1.09003 * 109.47494 * 178.91039 * 1 2 3 24 24 H 1.09006 * 110.75103 * 38.43110 * 4 2 1 25 25 H 1.08995 * 110.91116 * 275.14294 * 4 2 1 26 26 H 1.08998 * 110.48994 * 203.38403 * 5 4 2 27 27 H 1.08998 * 110.59826 * 80.78750 * 5 4 2 28 28 H 0.96997 * 119.99449 * 5.81230 * 12 11 9 29 29 H 1.09001 * 109.47178 * 35.23392 * 17 8 6 30 30 H 1.08993 * 109.47219 * 155.23693 * 17 8 6 31 31 H 1.09007 * 109.46898 * 185.00009 * 18 17 8 32 32 H 1.08994 * 109.47503 * 304.99977 * 18 17 8 33 33 H 0.96697 * 114.00309 * 179.97438 * 19 18 17 34 34 H 1.09003 * 110.03220 * 119.30970 * 20 6 5 35 35 H 1.08997 * 110.03271 * 240.74350 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0213 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4919 -1.1941 0.7628 6 6 3.3202 -1.5376 -0.7314 7 1 3.1757 -2.6111 -0.8535 8 7 4.4980 -1.1010 -1.4854 9 6 4.8766 0.2147 -1.4624 10 1 4.7072 0.8100 -0.5773 11 6 5.4781 0.7834 -2.5767 12 7 5.1993 0.3277 -3.7796 13 14 6.6832 2.1955 -2.3690 14 1 7.1820 2.6205 -3.7016 15 1 5.9998 3.3365 -1.7087 16 1 7.8265 1.7514 -1.5317 17 6 5.2706 -2.0721 -2.2639 18 6 6.2859 -2.7644 -1.3524 19 8 5.5942 -3.5343 -0.3671 20 6 2.0725 -0.7793 -1.2172 21 1 -0.3633 0.4968 0.8996 22 1 -0.3633 0.5306 -0.8800 23 1 -0.3634 -1.0275 -0.0195 24 1 1.4593 -1.6596 1.4228 25 1 2.1228 -0.1389 2.1028 26 1 3.8338 -2.0675 1.3180 27 1 4.1911 -0.3671 0.8861 28 1 4.5121 -0.3471 -3.8953 29 1 4.5967 -2.8164 -2.6882 30 1 5.7961 -1.5574 -3.0682 31 1 6.9199 -3.4215 -1.9477 32 1 6.9028 -2.0133 -0.8592 33 1 6.1767 -4.0022 0.2467 34 1 2.3433 -0.0865 -2.0140 35 1 1.3223 -1.4848 -1.5743 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388801672.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:48 Heat of formation + Delta-G solvation = -67.478685 kcal Electronic energy + Delta-G solvation = -15383.188472 eV Core-core repulsion = 12994.230789 eV Total energy + Delta-G solvation = -2388.957683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79780 -37.84339 -36.24700 -33.14508 -31.46140 -29.89334 -28.43069 -26.04142 -24.96742 -22.46370 -21.30558 -20.53952 -18.75279 -18.18951 -17.15884 -16.12949 -15.70062 -15.57116 -15.30520 -14.94777 -14.31832 -14.09850 -13.84007 -13.50815 -13.02074 -12.75345 -12.53231 -12.42413 -12.00451 -11.95006 -11.85719 -11.69082 -11.51930 -11.36261 -11.27259 -11.07029 -10.75871 -10.33448 -8.75424 -8.11978 -5.34587 1.58554 1.64074 1.83408 2.68226 3.21634 3.48848 3.67243 3.89151 3.92333 4.12429 4.41995 4.51260 4.56366 4.60769 4.67980 4.73693 4.80455 4.83283 4.92133 5.05841 5.12054 5.15334 5.22033 5.25961 5.28534 5.40261 5.58132 5.63852 5.64665 6.03388 6.46250 7.01202 7.20085 7.89665 8.35174 9.03635 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.013294 C = 0.009949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.802346 B = 2105.658455 C = 2813.688910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.047 0.953 4 C -0.106 4.106 5 C -0.119 4.119 6 C 0.175 3.825 7 H 0.048 0.952 8 N -0.595 5.595 9 C -0.327 4.327 10 H 0.041 0.959 11 C -0.075 4.075 12 N -0.933 5.933 13 Si 1.102 2.898 14 H -0.293 1.293 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.133 3.867 18 C 0.074 3.926 19 O -0.577 6.577 20 C -0.124 4.124 21 H 0.067 0.933 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.252 0.748 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.383 0.617 34 H 0.030 0.970 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 -4.498 8.482 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 H 0.066 0.934 4 C -0.144 4.144 5 C -0.158 4.158 6 C 0.068 3.932 7 H 0.066 0.934 8 N -0.316 5.316 9 C -0.458 4.458 10 H 0.059 0.941 11 C -0.272 4.272 12 N -0.575 5.575 13 Si 0.928 3.072 14 H -0.219 1.219 15 H -0.207 1.207 16 H -0.208 1.208 17 C 0.007 3.993 18 C -0.005 4.005 19 O -0.383 6.383 20 C -0.164 4.164 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.231 0.769 34 H 0.049 0.951 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.784 -3.256 7.354 8.511 hybrid contribution -0.371 -1.091 0.649 1.323 sum -3.154 -4.348 8.004 9.639 Atomic orbital electron populations 1.21733 0.93488 1.02082 1.01705 1.21839 0.96216 0.98028 0.94859 0.93442 1.22463 0.95464 0.99738 0.96756 1.22545 0.96841 0.99867 0.96533 1.21094 0.85669 0.95084 0.91331 0.93351 1.44129 1.27389 1.03858 1.56250 1.19833 1.39680 0.88365 0.97877 0.94082 1.26898 1.04459 1.04291 0.91502 1.70899 1.33012 1.30964 1.22627 0.83019 0.75330 0.73787 0.75101 1.21920 1.20734 1.20833 1.21038 0.93594 0.90553 0.94161 1.22655 0.94731 0.92703 0.90451 1.86493 1.38344 1.66730 1.46725 1.22611 0.97449 0.98514 0.97795 0.91358 0.93440 0.91939 0.90375 0.91215 0.92335 0.93905 0.93774 0.95506 0.91395 0.93131 0.95373 0.76922 0.95142 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.13 71.98 0.66 -2.94 16 2 C -0.09 -3.16 3.46 -9.68 -0.03 -3.19 16 3 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.11 -3.36 6.33 31.88 0.20 -3.16 16 5 C -0.12 -4.62 6.40 31.67 0.20 -4.42 16 6 C 0.17 7.66 2.79 45.72 0.13 7.79 16 7 H 0.05 2.13 7.64 -2.39 -0.02 2.11 16 8 N -0.60 -29.96 2.21 -674.01 -1.49 -31.45 16 9 C -0.33 -18.10 7.90 84.03 0.66 -17.44 16 10 H 0.04 2.35 6.76 -2.91 -0.02 2.33 16 11 C -0.07 -4.22 4.74 84.86 0.40 -3.81 16 12 N -0.93 -56.23 12.15 21.65 0.26 -55.97 16 13 Si 1.10 51.19 30.01 68.60 2.06 53.25 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 C 0.13 6.38 5.15 86.38 0.44 6.82 16 18 C 0.07 2.93 7.39 71.98 0.53 3.47 16 19 O -0.58 -20.41 12.73 -148.98 -1.90 -22.31 16 20 C -0.12 -5.20 5.85 31.36 0.18 -5.01 16 21 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 24 H 0.08 2.15 8.06 -2.38 -0.02 2.13 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.90 6.36 -2.39 -0.02 1.88 16 28 H 0.25 15.63 7.29 -92.71 -0.68 14.95 16 29 H 0.03 1.26 8.05 -2.39 -0.02 1.24 16 30 H 0.07 3.65 5.37 -2.39 -0.01 3.64 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.38 9.34 9.12 -74.06 -0.68 8.67 16 34 H 0.03 1.52 7.34 -2.39 -0.02 1.51 16 35 H 0.05 2.10 7.82 -2.39 -0.02 2.08 16 Total: -1.00 -64.02 276.48 2.79 -61.22 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.47 Total: 17.15 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 3.38 Total: -21.90 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -1.22 Total: -87.41 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.90 Total: -22.31 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.06 Total: 53.25 kcal Total: -64.02 2.79 -61.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388801672.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.254 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds