Wall clock time and date at job start Mon Mar 30 2020 04:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.05559 * 2 1 4 4 C 1.53868 * 110.03184 * 121.41759 * 2 1 3 5 5 C 1.54269 * 106.59737 * 119.28352 * 4 2 1 6 6 C 1.54886 * 104.19522 * 23.60971 * 5 4 2 7 7 H 1.09000 * 110.91828 * 80.44801 * 6 5 4 8 8 N 1.46504 * 110.75627 * 203.74096 * 6 5 4 9 9 C 1.36943 * 119.99699 * 53.33156 * 8 6 5 10 10 H 1.07995 * 120.00313 * 39.48881 * 9 8 6 11 11 C 1.38808 * 119.99444 * 219.49153 * 9 8 6 12 12 N 1.31616 * 120.00493 * 25.49819 * 11 9 8 13 13 Si 1.86808 * 119.99706 * 205.49251 * 11 9 8 14 14 H 1.48494 * 109.46958 * 60.00145 * 13 11 9 15 15 H 1.48496 * 109.47122 * 300.00019 * 13 11 9 16 16 H 1.48502 * 109.46780 * 180.02562 * 13 11 9 17 17 C 1.46501 * 120.00333 * 233.32921 * 8 6 5 18 18 C 1.53003 * 109.47051 * 275.43305 * 17 8 6 19 19 O 1.42904 * 109.47156 * 64.99836 * 18 17 8 20 20 C 1.54268 * 110.02994 * 238.58306 * 2 1 3 21 21 H 1.08998 * 109.47384 * 181.41600 * 1 2 3 22 22 H 1.09001 * 109.47325 * 301.41672 * 1 2 3 23 23 H 1.09004 * 109.47181 * 61.41398 * 1 2 3 24 24 H 1.08997 * 110.03537 * 238.56966 * 4 2 1 25 25 H 1.08998 * 110.03701 * 359.95182 * 4 2 1 26 26 H 1.09001 * 110.48435 * 264.92935 * 5 4 2 27 27 H 1.09006 * 110.48613 * 142.29149 * 5 4 2 28 28 H 0.97001 * 119.99804 * 5.42860 * 12 11 9 29 29 H 1.09004 * 109.47000 * 35.42868 * 17 8 6 30 30 H 1.08991 * 109.46922 * 155.43153 * 17 8 6 31 31 H 1.08992 * 109.46994 * 184.99818 * 18 17 8 32 32 H 1.09003 * 109.47045 * 305.00073 * 18 17 8 33 33 H 0.96693 * 113.99993 * 180.02562 * 19 18 17 34 34 H 1.09004 * 110.48327 * 98.42738 * 20 2 1 35 35 H 1.08995 * 110.48658 * 335.78601 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7535 1.2337 5 6 2.8874 -1.9407 0.7034 6 6 3.3136 -1.5007 -0.7192 7 1 4.1717 -0.8299 -0.6784 8 7 3.6077 -2.6662 -1.5568 9 6 2.6822 -3.6671 -1.6867 10 1 1.6331 -3.4249 -1.7710 11 6 3.0925 -4.9929 -1.7100 12 7 4.2210 -5.3429 -1.1301 13 14 2.0428 -6.2806 -2.5642 14 1 1.8940 -5.9259 -3.9984 15 1 0.7033 -6.3307 -1.9251 16 1 2.6964 -7.6089 -2.4475 17 6 4.8920 -2.7609 -2.2554 18 6 4.8087 -2.0012 -3.5809 19 8 4.6216 -0.6085 -3.3208 20 6 2.0584 -0.7555 -1.2369 21 1 -0.3634 -1.0273 0.0254 22 1 -0.3634 0.5357 0.8770 23 1 -0.3634 0.4917 -0.9024 24 1 2.6867 -0.0954 1.8324 25 1 1.2229 -1.1185 1.8329 26 1 2.2771 -2.8426 0.6570 27 1 3.7637 -2.1038 1.3309 28 1 4.7265 -4.6911 -0.6196 29 1 5.6757 -2.3252 -1.6356 30 1 5.1230 -3.8080 -2.4506 31 1 5.7326 -2.1452 -4.1408 32 1 3.9681 -2.3781 -4.1635 33 1 4.5596 -0.0645 -4.1177 34 1 2.3296 -0.0536 -2.0255 35 1 1.3142 -1.4659 -1.5966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388801673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:51 Heat of formation + Delta-G solvation = -72.301681 kcal Electronic energy + Delta-G solvation = -15368.679871 eV Core-core repulsion = 12979.513047 eV Total energy + Delta-G solvation = -2389.166824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74640 -37.85990 -36.28350 -33.11391 -31.48476 -29.91993 -28.34761 -26.09691 -24.99692 -22.53915 -21.32379 -20.32741 -18.74888 -18.18698 -17.03713 -16.41906 -15.76511 -15.61726 -15.36556 -14.48014 -14.29995 -14.14091 -13.76057 -13.64622 -13.23773 -12.77770 -12.46494 -12.44998 -12.17800 -11.90852 -11.81369 -11.67986 -11.46521 -11.44899 -11.18878 -11.03057 -10.74943 -10.35871 -8.73000 -8.06868 -5.45183 1.58427 1.64201 1.83563 2.66785 3.23693 3.47342 3.65593 3.89566 3.96115 4.14480 4.41434 4.50786 4.52742 4.63794 4.66744 4.69677 4.76905 4.84155 4.93315 5.06963 5.12044 5.17925 5.21243 5.23751 5.26901 5.38598 5.56838 5.62061 5.68913 6.05660 6.47332 7.01676 7.22664 7.86803 8.36040 9.02596 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.012656 C = 0.010045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.139273 B = 2211.821984 C = 2786.681376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.176 3.824 7 H 0.051 0.949 8 N -0.594 5.594 9 C -0.335 4.335 10 H 0.036 0.964 11 C -0.068 4.068 12 N -0.932 5.932 13 Si 1.105 2.895 14 H -0.279 1.279 15 H -0.280 1.280 16 H -0.292 1.292 17 C 0.141 3.859 18 C 0.074 3.926 19 O -0.576 6.576 20 C -0.112 4.112 21 H 0.038 0.962 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.253 0.747 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.383 0.617 34 H 0.054 0.946 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 10.047 -1.416 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.170 4.170 6 C 0.069 3.931 7 H 0.070 0.930 8 N -0.315 5.315 9 C -0.465 4.465 10 H 0.053 0.947 11 C -0.265 4.265 12 N -0.573 5.573 13 Si 0.931 3.069 14 H -0.206 1.206 15 H -0.206 1.206 16 H -0.218 1.218 17 C 0.014 3.986 18 C -0.006 4.006 19 O -0.383 6.383 20 C -0.151 4.151 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.231 0.769 34 H 0.073 0.927 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.241 8.232 -1.228 8.931 hybrid contribution 0.281 1.386 -0.092 1.418 sum -2.960 9.618 -1.320 10.149 Atomic orbital electron populations 1.21809 0.94368 1.01033 1.02056 1.21684 0.96248 0.98962 0.94165 0.90204 1.22116 0.99046 0.96199 0.97305 1.22615 0.98406 0.98187 0.97761 1.21398 0.95098 0.87873 0.88684 0.93041 1.43954 1.15720 1.20152 1.51684 1.19749 0.89870 0.87467 1.49406 0.94667 1.27109 1.00879 0.99146 0.99402 1.70896 1.18707 1.36413 1.31256 0.82981 0.74120 0.73784 0.76029 1.20564 1.20625 1.21830 1.20946 0.87731 0.98225 0.91691 1.22668 0.98141 0.81604 0.98197 1.86498 1.96388 1.18486 1.36878 1.22565 0.97844 0.97721 0.97013 0.94267 0.91212 0.92408 0.91027 0.91800 0.94156 0.94508 0.93727 0.95426 0.92175 0.93003 0.95273 0.76904 0.92698 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.84 71.98 0.64 -3.05 16 2 C -0.09 -2.87 3.50 -10.07 -0.04 -2.90 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.11 -3.56 6.46 31.32 0.20 -3.36 16 5 C -0.13 -5.57 6.34 31.67 0.20 -5.37 16 6 C 0.18 7.81 2.76 46.28 0.13 7.93 16 7 H 0.05 2.29 7.84 -2.39 -0.02 2.27 16 8 N -0.59 -30.05 2.21 -670.90 -1.49 -31.53 16 9 C -0.33 -18.55 7.70 84.03 0.65 -17.91 16 10 H 0.04 2.04 6.77 -2.91 -0.02 2.02 16 11 C -0.07 -3.82 4.76 84.86 0.40 -3.41 16 12 N -0.93 -56.24 12.35 21.65 0.27 -55.97 16 13 Si 1.11 51.00 29.99 68.60 2.06 53.06 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 17 C 0.14 6.69 5.16 86.38 0.45 7.14 16 18 C 0.07 2.86 7.39 71.98 0.53 3.40 16 19 O -0.58 -20.21 12.73 -148.98 -1.90 -22.10 16 20 C -0.11 -4.38 5.92 31.67 0.19 -4.20 16 21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.06 1.97 7.67 -2.39 -0.02 1.95 16 26 H 0.04 2.00 7.08 -2.39 -0.02 1.98 16 27 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.25 15.70 7.37 -92.71 -0.68 15.02 16 29 H 0.03 1.29 8.04 -2.38 -0.02 1.27 16 30 H 0.06 3.20 5.83 -2.39 -0.01 3.18 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.38 9.22 9.12 -74.06 -0.68 8.55 16 34 H 0.05 2.09 8.02 -2.38 -0.02 2.07 16 35 H 0.04 1.78 6.32 -2.39 -0.02 1.77 16 Total: -1.00 -64.13 276.62 2.76 -61.38 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.47 Total: 16.89 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.35 Total: -21.72 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -1.22 Total: -87.50 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.90 Total: -22.10 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.06 Total: 53.06 kcal Total: -64.13 2.76 -61.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388801673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.924 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds