Wall clock time and date at job start Mon Mar 30 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.67544 * 2 1 4 4 C 1.54894 * 110.75914 * 236.76706 * 2 1 3 5 5 C 1.54256 * 104.19917 * 203.55985 * 4 2 1 6 6 C 1.53875 * 106.60210 * 23.61061 * 5 4 2 7 7 H 1.09000 * 110.03462 * 240.71827 * 6 5 4 8 8 N 1.46499 * 110.03607 * 119.33289 * 6 5 4 9 9 C 1.36938 * 119.99725 * 302.09421 * 8 6 5 10 10 H 1.07998 * 120.00505 * 322.47219 * 9 8 6 11 11 C 1.38818 * 119.99835 * 142.47350 * 9 8 6 12 12 N 1.31621 * 120.00015 * 157.46876 * 11 9 8 13 13 Si 1.86799 * 119.99947 * 337.46380 * 11 9 8 14 14 H 1.48501 * 109.47083 * 95.35812 * 13 11 9 15 15 H 1.48494 * 109.47069 * 215.36077 * 13 11 9 16 16 H 1.48508 * 109.47059 * 335.36360 * 13 11 9 17 17 C 1.46498 * 120.00049 * 122.09329 * 8 6 5 18 18 C 1.52999 * 109.46955 * 86.29243 * 17 8 6 19 19 O 1.42901 * 109.46986 * 66.27044 * 18 17 8 20 20 C 1.54272 * 106.59282 * 359.97438 * 6 5 4 21 21 H 1.09009 * 109.47081 * 181.77789 * 1 2 3 22 22 H 1.08998 * 109.47161 * 301.77385 * 1 2 3 23 23 H 1.09000 * 109.47441 * 61.77899 * 1 2 3 24 24 H 1.09001 * 110.48672 * 84.87829 * 4 2 1 25 25 H 1.08999 * 110.48250 * 322.24159 * 4 2 1 26 26 H 1.09002 * 110.03431 * 264.32638 * 5 4 2 27 27 H 1.09003 * 110.03464 * 142.89293 * 5 4 2 28 28 H 0.96997 * 119.99500 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47052 * 206.28871 * 17 8 6 30 30 H 1.08994 * 109.46998 * 326.28969 * 17 8 6 31 31 H 1.09006 * 109.47065 * 186.27041 * 18 17 8 32 32 H 1.09002 * 109.46941 * 306.26916 * 18 17 8 33 33 H 0.96700 * 113.99507 * 179.97438 * 19 18 17 34 34 H 1.09003 * 110.48604 * 95.07156 * 20 6 5 35 35 H 1.09006 * 110.47995 * 217.70973 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7938 -1.2115 5 6 3.4949 -1.2214 -0.7735 6 6 3.4975 -1.2225 0.7653 7 1 4.2358 -0.5125 1.1380 8 7 3.7970 -2.5664 1.2657 9 6 3.0020 -3.6227 0.9089 10 1 1.9342 -3.4886 0.8181 11 6 3.5686 -4.8661 0.6639 12 7 2.8343 -5.9543 0.7593 13 14 5.3731 -4.9949 0.1987 14 1 6.1795 -5.2698 1.4151 15 1 5.5553 -6.1000 -0.7762 16 1 5.8192 -3.7169 -0.4124 17 6 4.9469 -2.7801 2.1479 18 6 4.5322 -2.5225 3.5979 19 8 3.5861 -3.5128 4.0058 20 6 2.0831 -0.7948 1.2085 21 1 -0.3634 -1.0273 0.0319 22 1 -0.3633 0.5411 0.8736 23 1 -0.3634 0.4859 -0.9055 24 1 2.1289 -0.1563 -2.0943 25 1 1.4593 -1.6690 -1.4065 26 1 4.2320 -0.5109 -1.1475 27 1 3.7156 -2.2210 -1.1479 28 1 3.2302 -6.8230 0.5878 29 1 5.2961 -3.8077 2.0470 30 1 5.7486 -2.0952 1.8720 31 1 5.4106 -2.5722 4.2414 32 1 4.0799 -1.5338 3.6762 33 1 3.2789 -3.4113 4.9171 34 1 1.4637 -1.6701 1.4044 35 1 2.1363 -0.1585 2.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388801674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:53 Heat of formation + Delta-G solvation = -36.561247 kcal Electronic energy + Delta-G solvation = -15416.559034 eV Core-core repulsion = 13028.942032 eV Total energy + Delta-G solvation = -2387.617002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.21299 -36.21396 -34.23346 -31.46097 -30.15271 -28.24212 -27.13480 -24.58041 -22.97153 -21.35067 -19.37789 -18.86881 -16.67151 -16.36478 -15.43133 -15.00032 -14.42599 -13.61638 -13.51660 -13.01324 -12.75412 -12.62035 -12.26275 -12.08730 -11.59491 -11.24267 -11.01032 -10.77237 -10.53512 -10.26372 -10.18145 -10.07832 -9.87502 -9.70942 -9.58909 -9.41309 -9.07105 -8.31115 -6.64824 -5.80120 -3.18761 3.40842 3.54941 3.58924 4.67551 4.94559 5.14398 5.23258 5.36470 5.44135 5.60869 5.88627 5.94138 5.97255 6.01853 6.08215 6.15233 6.21792 6.28029 6.39320 6.42982 6.47186 6.55711 6.60897 6.69304 6.79678 6.81974 7.03973 7.21718 7.24365 8.23096 8.49014 8.59882 9.16781 9.91504 10.29748 11.36470 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.012887 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.376699 B = 2172.143562 C = 2520.550186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.172 3.828 7 H 0.048 0.952 8 N -0.593 5.593 9 C -0.238 4.238 10 H 0.077 0.923 11 C 0.038 3.962 12 N -0.902 5.902 13 Si 0.869 3.131 14 H -0.290 1.290 15 H -0.305 1.305 16 H -0.270 1.270 17 C 0.131 3.869 18 C 0.062 3.938 19 O -0.537 6.537 20 C -0.127 4.127 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.259 0.741 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.353 0.647 34 H 0.082 0.918 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 11.111 1.513 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.174 4.174 6 C 0.065 3.935 7 H 0.066 0.934 8 N -0.314 5.314 9 C -0.367 4.367 10 H 0.094 0.906 11 C -0.161 4.161 12 N -0.544 5.544 13 Si 0.700 3.300 14 H -0.218 1.218 15 H -0.233 1.233 16 H -0.195 1.195 17 C 0.005 3.995 18 C -0.019 4.019 19 O -0.338 6.338 20 C -0.166 4.166 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.196 0.804 34 H 0.100 0.900 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.122 10.708 0.850 10.800 hybrid contribution 1.040 0.030 0.415 1.121 sum 2.162 10.738 1.265 11.027 Atomic orbital electron populations 1.21736 0.95864 1.01813 1.00335 1.22039 0.94694 0.98291 0.96667 0.91972 1.22301 0.97347 0.99069 0.96172 1.22566 0.95298 1.01658 0.97829 1.21024 0.94115 0.86535 0.91795 0.93375 1.44184 1.31430 1.04169 1.51639 1.18477 0.90411 0.86819 1.40972 0.90564 1.25366 0.96495 0.95666 0.98570 1.69883 1.36376 0.97394 1.50699 0.87052 0.88263 0.76986 0.77722 1.21787 1.23296 1.19538 1.21335 0.90036 1.00299 0.87872 1.22912 0.90261 0.90739 0.97958 1.86925 1.62440 1.52596 1.31805 1.22857 0.98891 0.99364 0.95491 0.92414 0.93458 0.93538 0.93387 0.91472 0.93914 0.90232 0.93154 0.91776 0.93366 0.96096 0.95047 0.80411 0.89969 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.28 37.16 0.34 -1.66 16 2 C -0.10 -1.55 3.48 -88.64 -0.31 -1.86 16 3 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.90 6.27 -25.07 -0.16 -2.05 16 5 C -0.13 -2.58 6.26 -25.62 -0.16 -2.74 16 6 C 0.17 3.44 3.42 -66.81 -0.23 3.21 16 7 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 8 N -0.59 -14.03 2.00 -164.39 -0.33 -14.36 16 9 C -0.24 -6.63 8.10 -15.06 -0.12 -6.76 16 10 H 0.08 2.32 6.89 -52.49 -0.36 1.96 16 11 C 0.04 1.13 5.28 -17.43 -0.09 1.04 16 12 N -0.90 -28.33 13.97 55.49 0.78 -27.55 16 13 Si 0.87 22.75 25.06 -169.99 -4.26 18.49 16 14 H -0.29 -7.50 6.67 56.52 0.38 -7.13 16 15 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 16 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.13 2.90 4.73 -4.04 -0.02 2.88 16 18 C 0.06 1.20 7.38 37.16 0.27 1.47 16 19 O -0.54 -11.61 13.36 -35.23 -0.47 -12.08 16 20 C -0.13 -2.34 5.86 -25.08 -0.15 -2.49 16 21 H 0.06 0.90 8.13 -51.92 -0.42 0.47 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.25 8.05 -51.93 -0.42 0.84 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.79 7.29 -51.93 -0.38 1.41 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.06 1.60 3.46 -51.93 -0.18 1.42 16 30 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.35 5.58 9.12 45.56 0.42 6.00 16 34 H 0.08 1.79 6.33 -51.93 -0.33 1.46 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -32.00 273.96 -5.81 -37.81 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.04 Total: 2.53 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.62 Total: -8.96 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.45 Total: -41.92 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.47 Total: -12.08 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.26 Total: 18.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.00 -5.81 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388801674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.248 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds