Wall clock time and date at job start Mon Mar 30 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 112.85133 * 2 1 4 4 C 1.53784 * 113.61825 * 228.69225 * 2 1 3 5 5 C 1.53777 * 87.08329 * 220.02507 * 4 2 1 6 6 C 1.53785 * 113.60971 * 131.19633 * 2 1 3 7 7 H 1.08994 * 113.61753 * 25.35393 * 6 2 1 8 8 N 1.46898 * 113.61637 * 254.52728 * 6 2 1 9 9 C 1.46903 * 111.00351 * 155.00074 * 8 6 2 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 8 6 11 11 O 1.42903 * 109.46972 * 64.99939 * 10 9 8 12 12 C 1.42905 * 113.99594 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46835 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46986 * 270.00126 * 17 15 13 19 19 H 1.48496 * 109.47029 * 30.00143 * 17 15 13 20 20 H 1.48499 * 109.47352 * 149.99973 * 17 15 13 21 21 H 1.08999 * 109.47782 * 288.80241 * 1 2 3 22 22 H 1.09004 * 109.46689 * 48.80812 * 1 2 3 23 23 H 1.09006 * 109.47057 * 168.80118 * 1 2 3 24 24 H 1.09004 * 113.60780 * 334.57010 * 4 2 1 25 25 H 1.09001 * 113.61546 * 105.38342 * 4 2 1 26 26 H 1.09003 * 113.61239 * 270.88625 * 5 4 2 27 27 H 1.08999 * 113.61540 * 139.98160 * 5 4 2 28 28 H 1.00907 * 110.99441 * 31.05073 * 8 6 2 29 29 H 1.09000 * 109.46683 * 60.00283 * 9 8 6 30 30 H 1.08994 * 109.46833 * 300.00876 * 9 8 6 31 31 H 1.09005 * 109.47032 * 305.00418 * 10 9 8 32 32 H 1.08995 * 109.47071 * 184.99975 * 10 9 8 33 33 H 1.08994 * 109.47298 * 60.00506 * 12 11 10 34 34 H 1.08998 * 109.47434 * 300.00112 * 12 11 10 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0044 0.0000 4 6 2.1461 -0.9301 -1.0584 5 6 3.1923 -1.3137 0.0013 6 6 2.1459 -0.9281 1.0603 7 1 1.4938 -1.7515 1.3517 8 7 2.7106 -0.2125 2.2122 9 6 2.7356 -1.0704 3.4044 10 6 3.3282 -0.2919 4.5807 11 8 2.4641 0.7958 4.9157 12 6 2.9278 1.5911 6.0087 13 6 1.9448 2.7020 6.2742 14 1 1.0548 2.7915 5.6690 15 6 2.1817 3.6041 7.2895 16 7 3.2658 3.4955 8.0261 17 14 0.9628 4.9809 7.6190 18 1 1.3307 6.1715 6.8114 19 1 -0.4029 4.5326 7.2463 20 1 0.9918 5.3329 9.0614 21 1 -0.3634 0.3312 0.9728 22 1 -0.3633 0.6768 -0.7734 23 1 -0.3633 -1.0082 -0.1996 24 1 1.4945 -1.7549 -1.3472 25 1 2.5638 -0.4008 -1.9149 26 1 4.0710 -0.6687 0.0008 27 1 3.4442 -2.3742 0.0023 28 1 2.2033 0.6412 2.3916 29 1 3.3471 -1.9506 3.2058 30 1 1.7201 -1.3813 3.6496 31 1 4.3087 0.0952 4.3031 32 1 3.4291 -0.9540 5.4406 33 1 3.9000 2.0172 5.7612 34 1 3.0201 0.9678 6.8982 35 1 3.8985 2.7803 7.8552 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395423461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:36 Heat of formation + Delta-G solvation = -48.216435 kcal Electronic energy + Delta-G solvation = -14119.331983 eV Core-core repulsion = 11731.209574 eV Total energy + Delta-G solvation = -2388.122409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32077 -37.02986 -34.15726 -32.79694 -29.84386 -28.55346 -26.24428 -23.77909 -22.92468 -22.50804 -21.30654 -19.36187 -17.03069 -16.13404 -15.67525 -15.33675 -14.73800 -14.28007 -13.76381 -13.39521 -13.31942 -13.20425 -13.05922 -12.30043 -11.69060 -11.64224 -11.54354 -11.43643 -11.10190 -10.84616 -10.67823 -10.47154 -10.18127 -10.11345 -9.96962 -8.85404 -8.63000 -8.24194 -8.21308 -6.46450 -4.15068 3.42443 3.46698 3.63049 4.34873 4.43921 4.52272 4.59068 4.81466 4.89144 4.93391 5.31743 5.36676 5.43316 5.50647 5.54118 5.65013 5.67974 5.77874 5.86603 5.94408 5.97827 6.07414 6.11796 6.23658 6.34945 6.42824 6.77817 7.14052 7.30070 7.64870 7.89080 8.18166 8.63446 8.81008 9.55746 10.93918 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039752 B = 0.005586 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.196438 B = 5011.664125 C = 5520.841276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.138 4.138 5 C -0.128 4.128 6 C 0.062 3.938 7 H 0.068 0.932 8 N -0.676 5.676 9 C 0.066 3.934 10 C 0.059 3.941 11 O -0.390 6.390 12 C 0.188 3.812 13 C -0.596 4.596 14 H 0.060 0.940 15 C 0.017 3.983 16 N -0.912 5.912 17 Si 1.082 2.918 18 H -0.286 1.286 19 H -0.287 1.287 20 H -0.283 1.283 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.356 0.644 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.040 0.960 33 H -0.004 1.004 34 H -0.006 1.006 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -9.264 -14.850 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 H 0.115 0.885 4 C -0.176 4.176 5 C -0.166 4.166 6 C -0.049 4.049 7 H 0.086 0.914 8 N -0.309 5.309 9 C -0.063 4.063 10 C -0.019 4.019 11 O -0.310 6.310 12 C 0.113 3.887 13 C -0.634 4.634 14 H 0.078 0.922 15 C -0.186 4.186 16 N -0.548 5.548 17 Si 0.909 3.091 18 H -0.212 1.212 19 H -0.213 1.213 20 H -0.208 1.208 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.176 0.824 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.223 -8.052 -14.113 16.400 hybrid contribution -0.256 -1.520 -0.543 1.635 sum -2.479 -9.572 -14.656 17.680 Atomic orbital electron populations 1.21763 0.95029 1.01451 1.01994 1.22833 0.95353 0.99243 0.96221 0.88543 1.22841 0.98671 0.99289 0.96789 1.23000 0.97712 1.00825 0.95098 1.23131 0.95314 0.96393 0.90034 0.91369 1.60632 1.58119 1.08062 1.04067 1.21976 0.99437 0.95432 0.89498 1.22354 0.94319 0.90093 0.95121 1.87818 1.47586 1.41590 1.54007 1.20264 0.95379 0.89656 0.83374 1.21921 1.08877 1.12957 1.19692 0.92200 1.25933 0.99645 1.00473 0.92586 1.70769 1.10643 1.33687 1.39663 0.83369 0.74444 0.74830 0.76474 1.21216 1.21286 1.20840 0.92360 0.92590 0.92879 0.90491 0.91457 0.89405 0.92160 0.82396 0.90714 0.94832 0.93567 0.94234 0.98617 0.98848 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.71 37.16 0.36 -1.16 16 2 C -0.12 -1.32 3.93 -89.81 -0.35 -1.68 16 3 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.14 -1.34 7.63 -25.92 -0.20 -1.54 16 5 C -0.13 -1.41 7.88 -25.92 -0.20 -1.62 16 6 C 0.06 0.77 3.70 -66.90 -0.25 0.53 16 7 H 0.07 0.85 7.82 -51.93 -0.41 0.44 16 8 N -0.68 -10.45 6.56 -105.87 -0.69 -11.15 16 9 C 0.07 1.04 5.95 -3.82 -0.02 1.02 16 10 C 0.06 1.13 6.28 37.16 0.23 1.36 16 11 O -0.39 -9.56 9.85 -35.23 -0.35 -9.90 16 12 C 0.19 5.22 5.00 36.01 0.18 5.40 16 13 C -0.60 -17.96 9.43 -34.44 -0.32 -18.28 16 14 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 16 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 17 Si 1.08 25.71 29.90 -169.99 -5.08 20.63 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.50 7.94 -51.93 -0.41 0.09 16 24 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.36 6.13 8.10 -39.29 -0.32 5.81 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.00 -0.11 8.01 -51.93 -0.42 -0.53 16 34 H -0.01 -0.17 8.01 -51.93 -0.42 -0.59 16 35 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 290.55 15.07 4.38 4.38 Total: -1.00 -31.33 290.55 -7.77 -39.10 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.11 Total: 0.02 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.67 Total: -15.57 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.06 Total: -38.66 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.35 Total: -9.90 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.33 -7.77 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395423461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.115 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds