Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 112.85187 * 2 1 4 4 C 1.53779 * 113.69268 * 131.27039 * 2 1 3 5 5 C 1.53784 * 87.08045 * 139.99100 * 4 2 1 6 6 C 1.53779 * 113.61005 * 228.80801 * 2 1 3 7 7 H 1.08998 * 113.69354 * 334.48969 * 6 2 1 8 8 N 1.46896 * 113.61504 * 105.38722 * 6 2 1 9 9 C 1.46903 * 111.00269 * 201.99766 * 8 6 2 10 10 C 1.53000 * 109.47582 * 179.97438 * 9 8 6 11 11 O 1.42900 * 109.46735 * 65.00348 * 10 9 8 12 12 C 1.42897 * 113.99779 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47303 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99682 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00160 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46686 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46934 * 119.99901 * 17 15 13 20 20 H 1.48495 * 109.46932 * 240.00041 * 17 15 13 21 21 H 1.08996 * 109.47144 * 191.19706 * 1 2 3 22 22 H 1.09011 * 109.46625 * 311.19146 * 1 2 3 23 23 H 1.08997 * 109.47612 * 71.19283 * 1 2 3 24 24 H 1.09002 * 113.61557 * 25.44212 * 4 2 1 25 25 H 1.09004 * 113.61501 * 254.53633 * 4 2 1 26 26 H 1.09004 * 113.61451 * 220.02152 * 5 4 2 27 27 H 1.08994 * 113.61477 * 89.11454 * 5 4 2 28 28 H 1.00900 * 110.99932 * 325.95152 * 8 6 2 29 29 H 1.08997 * 109.47369 * 300.00422 * 9 8 6 30 30 H 1.09013 * 109.46599 * 59.99579 * 9 8 6 31 31 H 1.08999 * 109.46787 * 185.00450 * 10 9 8 32 32 H 1.08998 * 109.47171 * 305.00599 * 10 9 8 33 33 H 1.09008 * 109.47178 * 299.99836 * 12 11 10 34 34 H 1.08997 * 109.47416 * 59.99702 * 12 11 10 35 35 H 0.97005 * 120.00360 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9534 1.0045 0.0000 4 6 2.1480 -0.9288 1.0584 5 6 3.1937 -1.3119 -0.0021 6 6 2.1459 -0.9280 -1.0603 7 1 1.4960 -1.7534 -1.3507 8 7 2.7089 -0.2124 -2.2131 9 6 2.7996 -1.0922 -3.3860 10 6 3.3884 -0.3132 -4.5638 11 8 4.7356 0.0571 -4.2640 12 6 5.3812 0.7937 -5.3045 13 6 6.7884 1.1302 -4.8832 14 1 7.1531 0.8136 -3.9172 15 6 7.6102 1.8422 -5.7310 16 7 7.1662 2.2272 -6.9074 17 14 9.3543 2.2599 -5.2084 18 1 9.6073 1.7170 -3.8495 19 1 10.3157 1.6604 -6.1684 20 1 9.5262 3.7348 -5.1915 21 1 -0.3633 -1.0081 0.1995 22 1 -0.3633 0.6769 0.7734 23 1 -0.3634 0.3313 -0.9727 24 1 1.4976 -1.7541 1.3483 25 1 2.5673 -0.3985 1.9134 26 1 3.4468 -2.3721 -0.0028 27 1 4.0717 -0.6661 -0.0027 28 1 2.1711 0.6152 -2.4227 29 1 3.4421 -1.9417 -3.1541 30 1 1.8043 -1.4507 -3.6490 31 1 3.3734 -0.9383 -5.4566 32 1 2.7952 0.5844 -4.7386 33 1 5.4076 0.1919 -6.2131 34 1 4.8292 1.7142 -5.4944 35 1 7.7445 2.7279 -7.5040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395423463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = -40.888213 kcal Electronic energy + Delta-G solvation = -14062.933769 eV Core-core repulsion = 11675.129135 eV Total energy + Delta-G solvation = -2387.804634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27840 -36.77245 -34.07894 -32.53568 -29.86995 -28.57730 -26.60646 -23.71485 -22.91352 -22.22454 -21.30691 -19.31253 -16.42232 -16.10709 -15.70025 -14.93878 -14.65349 -14.48677 -14.03737 -13.31327 -13.24783 -13.15111 -12.96832 -12.21424 -11.86570 -11.64835 -11.27465 -11.24922 -10.92890 -10.74012 -10.72445 -10.48387 -10.24372 -10.07236 -9.83469 -9.01115 -8.74784 -8.12448 -8.06039 -6.05041 -4.05672 3.33399 3.39559 3.47038 4.35394 4.41130 4.51596 4.62540 4.90302 4.96835 4.99433 5.31579 5.32595 5.42312 5.51186 5.62104 5.64689 5.73962 5.78255 5.86141 6.03168 6.06393 6.12420 6.14762 6.32361 6.39586 6.50526 7.17252 7.35675 7.50352 7.64240 7.87520 8.23663 8.69012 9.09796 9.59123 11.06791 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042721 B = 0.005354 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.261533 B = 5228.913283 C = 5584.202760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.138 4.138 5 C -0.127 4.127 6 C 0.062 3.938 7 H 0.065 0.935 8 N -0.664 5.664 9 C 0.065 3.935 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.193 3.807 13 C -0.509 4.509 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.339 0.661 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -5.788 11.495 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.115 0.885 4 C -0.176 4.176 5 C -0.165 4.165 6 C -0.048 4.048 7 H 0.083 0.917 8 N -0.295 5.295 9 C -0.064 4.064 10 C -0.013 4.013 11 O -0.299 6.299 12 C 0.118 3.882 13 C -0.547 4.547 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.827 -5.844 11.681 17.620 hybrid contribution -0.198 0.301 -0.538 0.647 sum -12.025 -5.543 11.143 17.306 Atomic orbital electron populations 1.21760 0.95266 1.01504 1.01546 1.22813 0.94905 0.99395 0.96486 0.88481 1.22844 0.98753 0.99154 0.96888 1.22995 0.97819 1.01168 0.94556 1.23127 0.95445 0.96074 0.90127 0.91738 1.60496 1.55991 1.08124 1.04901 1.22022 0.97818 0.96356 0.90250 1.22236 0.87011 0.96943 0.95143 1.87959 1.22617 1.75150 1.44183 1.20189 0.92444 0.89785 0.85757 1.21116 0.96224 1.34288 1.03093 0.91456 1.24949 0.99146 0.95725 0.94783 1.69976 1.36717 1.38780 1.08595 0.86296 0.83522 0.77997 0.78782 1.19446 1.20915 1.20898 0.92843 0.92630 0.92789 0.90595 0.91425 0.92112 0.88928 0.84265 0.90498 0.95052 0.94310 0.94863 0.98025 0.97922 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.71 37.16 0.36 -0.91 16 2 C -0.12 -1.25 3.96 -89.81 -0.36 -1.60 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.14 -1.39 7.64 -25.92 -0.20 -1.59 16 5 C -0.13 -1.58 7.88 -25.91 -0.20 -1.78 16 6 C 0.06 0.78 3.67 -66.90 -0.25 0.53 16 7 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 8 N -0.66 -10.15 6.49 -105.86 -0.69 -10.83 16 9 C 0.06 1.01 5.93 -3.82 -0.02 0.99 16 10 C 0.06 1.24 6.22 37.16 0.23 1.47 16 11 O -0.38 -9.55 10.27 -35.23 -0.36 -9.91 16 12 C 0.19 5.47 5.69 36.00 0.20 5.67 16 13 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 14 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 17 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.05 0.44 7.95 -51.93 -0.41 0.03 16 22 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.68 7.97 -51.93 -0.41 0.26 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.34 4.88 8.58 -39.29 -0.34 4.54 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.03 0.41 8.13 -51.92 -0.42 -0.01 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.00 0.06 8.14 -51.92 -0.42 -0.37 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -31.76 292.66 -7.76 -39.52 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.19 Total: -2.23 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.65 Total: -11.48 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.05 Total: -37.63 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.36 Total: -9.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.76 -7.76 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395423463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.364 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds