Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 112.85187 * 2 1 4 4 C 1.53779 * 113.69268 * 131.27039 * 2 1 3 5 5 C 1.53784 * 87.08045 * 139.99100 * 4 2 1 6 6 C 1.53779 * 113.61005 * 228.80801 * 2 1 3 7 7 H 1.08998 * 113.69354 * 334.48969 * 6 2 1 8 8 N 1.46896 * 113.61504 * 105.38722 * 6 2 1 9 9 C 1.46903 * 111.00269 * 201.99766 * 8 6 2 10 10 C 1.53000 * 109.47582 * 179.97438 * 9 8 6 11 11 O 1.42900 * 109.46735 * 65.00348 * 10 9 8 12 12 C 1.42897 * 113.99779 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47303 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99682 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00160 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46686 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46934 * 119.99901 * 17 15 13 20 20 H 1.48495 * 109.46932 * 240.00041 * 17 15 13 21 21 H 1.08996 * 109.47144 * 191.19706 * 1 2 3 22 22 H 1.09011 * 109.46625 * 311.19146 * 1 2 3 23 23 H 1.08997 * 109.47612 * 71.19283 * 1 2 3 24 24 H 1.09002 * 113.61557 * 25.44212 * 4 2 1 25 25 H 1.09004 * 113.61501 * 254.53633 * 4 2 1 26 26 H 1.09004 * 113.61451 * 220.02152 * 5 4 2 27 27 H 1.08994 * 113.61477 * 89.11454 * 5 4 2 28 28 H 1.00900 * 110.99932 * 325.95152 * 8 6 2 29 29 H 1.08997 * 109.47369 * 300.00422 * 9 8 6 30 30 H 1.09013 * 109.46599 * 59.99579 * 9 8 6 31 31 H 1.08999 * 109.46787 * 185.00450 * 10 9 8 32 32 H 1.08998 * 109.47171 * 305.00599 * 10 9 8 33 33 H 1.09008 * 109.47178 * 299.99836 * 12 11 10 34 34 H 1.08997 * 109.47416 * 59.99702 * 12 11 10 35 35 H 0.97005 * 120.00360 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9534 1.0045 0.0000 4 6 2.1480 -0.9288 1.0584 5 6 3.1937 -1.3119 -0.0021 6 6 2.1459 -0.9280 -1.0603 7 1 1.4960 -1.7534 -1.3507 8 7 2.7089 -0.2124 -2.2131 9 6 2.7996 -1.0922 -3.3860 10 6 3.3884 -0.3132 -4.5638 11 8 4.7356 0.0571 -4.2640 12 6 5.3812 0.7937 -5.3045 13 6 6.7884 1.1302 -4.8832 14 1 7.1531 0.8136 -3.9172 15 6 7.6102 1.8422 -5.7310 16 7 7.1662 2.2272 -6.9074 17 14 9.3543 2.2599 -5.2084 18 1 9.6073 1.7170 -3.8495 19 1 10.3157 1.6604 -6.1684 20 1 9.5262 3.7348 -5.1915 21 1 -0.3633 -1.0081 0.1995 22 1 -0.3633 0.6769 0.7734 23 1 -0.3634 0.3313 -0.9727 24 1 1.4976 -1.7541 1.3483 25 1 2.5673 -0.3985 1.9134 26 1 3.4468 -2.3721 -0.0028 27 1 4.0717 -0.6661 -0.0027 28 1 2.1711 0.6152 -2.4227 29 1 3.4421 -1.9417 -3.1541 30 1 1.8043 -1.4507 -3.6490 31 1 3.3734 -0.9383 -5.4566 32 1 2.7952 0.5844 -4.7386 33 1 5.4076 0.1919 -6.2131 34 1 4.8292 1.7142 -5.4944 35 1 7.7445 2.7279 -7.5040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395423463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = -62.598981 kcal Electronic energy + Delta-G solvation = -14063.875218 eV Core-core repulsion = 11675.129135 eV Total energy + Delta-G solvation = -2388.746083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.23438 -38.59419 -35.53866 -34.65789 -30.69960 -30.21671 -28.55861 -24.76972 -24.43851 -23.85308 -22.62266 -20.24036 -18.62444 -17.56326 -17.27638 -16.56791 -16.25453 -15.70372 -15.45935 -14.92666 -14.52612 -14.12202 -13.99517 -13.76412 -13.44366 -13.06775 -12.80061 -12.68569 -12.46882 -12.31535 -12.16613 -11.92849 -11.63498 -11.24586 -11.12297 -10.95119 -10.84273 -10.18795 -9.23513 -8.31790 -6.43719 1.39784 1.41504 1.56571 2.35752 3.01821 3.20327 3.30596 3.63258 3.75850 4.01000 4.05181 4.25448 4.30144 4.53570 4.56319 4.61076 4.64475 4.75861 4.83539 4.90211 4.97050 5.00842 5.07331 5.15973 5.19312 5.28692 5.49409 5.55137 5.57014 5.97951 6.25491 6.49870 6.58808 6.87114 7.28742 8.80926 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042721 B = 0.005354 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.261533 B = 5228.913283 C = 5584.202760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.083 0.917 4 C -0.125 4.125 5 C -0.137 4.137 6 C 0.060 3.940 7 H 0.079 0.921 8 N -0.688 5.688 9 C 0.075 3.925 10 C 0.054 3.946 11 O -0.397 6.397 12 C 0.208 3.792 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.984 3.016 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.270 1.270 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.341 0.659 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.039 0.961 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 -6.091 12.505 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.102 0.898 4 C -0.163 4.163 5 C -0.176 4.176 6 C -0.050 4.050 7 H 0.096 0.904 8 N -0.320 5.320 9 C -0.054 4.054 10 C -0.023 4.023 11 O -0.317 6.317 12 C 0.132 3.868 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.188 -6.157 12.696 18.645 hybrid contribution -0.167 0.370 -0.871 0.961 sum -12.355 -5.787 11.825 18.055 Atomic orbital electron populations 1.21728 0.93560 1.02433 1.01891 1.22746 0.96221 0.98442 0.95752 0.89847 1.22818 0.97786 0.99448 0.96260 1.22999 0.97548 1.00805 0.96231 1.23254 0.95706 0.96776 0.89251 0.90367 1.60459 1.57227 1.08737 1.05552 1.21911 0.99008 0.95334 0.89116 1.22609 0.84325 0.97867 0.97491 1.87915 1.25679 1.74736 1.43321 1.19812 0.92185 0.88920 0.85847 1.21411 0.97668 1.35961 1.03332 0.92340 1.25958 1.03967 0.94767 0.94488 1.70073 1.38719 1.38728 1.09577 0.85133 0.77314 0.78284 0.78642 1.19008 1.19481 1.19537 0.91782 0.91720 0.92872 0.88668 0.90949 0.91772 0.91649 0.83974 0.91403 0.91474 0.93467 0.94236 0.99820 0.99867 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.71 71.98 0.70 -1.43 16 2 C -0.11 -2.22 3.96 -10.27 -0.04 -2.26 16 3 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 4 C -0.13 -2.29 7.64 31.12 0.24 -2.05 16 5 C -0.14 -3.33 7.88 31.12 0.25 -3.08 16 6 C 0.06 1.40 3.67 45.44 0.17 1.57 16 7 H 0.08 1.65 7.85 -2.39 -0.02 1.63 16 8 N -0.69 -20.66 6.49 -488.84 -3.17 -23.83 16 9 C 0.08 2.28 5.93 86.30 0.51 2.79 16 10 C 0.05 2.09 6.22 71.98 0.45 2.54 16 11 O -0.40 -20.44 10.27 -148.98 -1.53 -21.97 16 12 C 0.21 12.16 5.69 71.24 0.41 12.57 16 13 C -0.55 -33.84 9.43 25.60 0.24 -33.60 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 17 Si 0.98 45.59 29.54 68.60 2.03 47.61 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H 0.06 0.85 7.95 -2.39 -0.02 0.84 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 1.40 7.97 -2.39 -0.02 1.38 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.34 9.69 8.58 -89.69 -0.77 8.92 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.58 8.13 -2.38 -0.02 1.56 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 34 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -68.32 292.66 1.25 -67.07 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.27 Total: 10.15 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 3.38 Total: -22.11 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.89 Total: -80.75 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.53 Total: -21.97 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.32 1.25 -67.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395423463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.471 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds