Wall clock time and date at job start Mon Mar 30 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 112.90694 * 2 1 4 4 C 1.53776 * 113.61652 * 131.24911 * 2 1 3 5 5 C 1.53780 * 87.08140 * 89.11431 * 4 2 1 6 6 C 1.53779 * 113.61379 * 228.75018 * 2 1 3 7 7 H 1.09000 * 113.68800 * 156.32367 * 6 2 1 8 8 N 1.46894 * 113.61663 * 25.43331 * 6 2 1 9 9 C 1.46901 * 111.00417 * 158.00087 * 8 6 2 10 10 C 1.52991 * 109.47407 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.47291 * 64.99614 * 10 9 8 12 12 C 1.42894 * 114.00235 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47460 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99441 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00075 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99886 * 179.73007 * 15 13 12 18 18 H 1.48494 * 109.47225 * 180.27306 * 17 15 13 19 19 H 1.48506 * 109.46866 * 300.27330 * 17 15 13 20 20 H 1.48498 * 109.47306 * 60.26614 * 17 15 13 21 21 H 1.08994 * 109.47270 * 191.24852 * 1 2 3 22 22 H 1.09002 * 109.47158 * 311.25425 * 1 2 3 23 23 H 1.08999 * 109.47028 * 71.24917 * 1 2 3 24 24 H 1.09007 * 113.61223 * 334.57099 * 4 2 1 25 25 H 1.08996 * 113.61647 * 203.66445 * 4 2 1 26 26 H 1.09002 * 113.61691 * 270.88603 * 5 4 2 27 27 H 1.09003 * 113.61350 * 139.97786 * 5 4 2 28 28 H 1.00899 * 111.00023 * 34.04122 * 8 6 2 29 29 H 1.09002 * 109.46943 * 59.99165 * 9 8 6 30 30 H 1.08997 * 109.46666 * 299.99824 * 9 8 6 31 31 H 1.09003 * 109.47267 * 305.00052 * 10 9 8 32 32 H 1.08998 * 109.47287 * 185.00104 * 10 9 8 33 33 H 1.09009 * 109.47133 * 60.00543 * 12 11 10 34 34 H 1.08998 * 109.47768 * 300.00964 * 12 11 10 35 35 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 2.0929 -2.0425 0.0001 6 6 2.1460 -0.9290 -1.0594 7 1 3.1590 -0.6508 -1.3500 8 7 1.2680 -1.1710 -2.2119 9 6 2.0436 -1.5975 -3.3843 10 6 1.0970 -1.8399 -4.5615 11 8 0.4842 -0.6062 -4.9419 12 6 -0.4233 -0.7222 -6.0395 13 6 -1.0070 0.6312 -6.3539 14 1 -0.7138 1.4937 -5.7738 15 6 -1.9153 0.7682 -7.3821 16 7 -2.2720 -0.2819 -8.0889 17 14 -2.6445 2.4444 -7.7670 18 1 -3.5922 2.3229 -8.9037 19 1 -3.3656 2.9563 -6.5739 20 1 -1.5554 3.3868 -8.1289 21 1 -0.3633 -1.0079 0.2004 22 1 -0.3633 0.6777 0.7726 23 1 -0.3633 0.3303 -0.9731 24 1 1.4945 -1.1086 1.9146 25 1 3.1590 -0.6498 1.3489 26 1 1.1568 -2.6009 0.0001 27 1 2.9717 -2.6874 0.0000 28 1 0.7142 -0.3543 -2.4223 29 1 2.5769 -2.5192 -3.1515 30 1 2.7604 -0.8199 -3.6482 31 1 0.3265 -2.5527 -4.2674 32 1 1.6603 -2.2409 -5.4041 33 1 -1.2254 -1.4119 -5.7765 34 1 0.1087 -1.0998 -6.9127 35 1 -1.8930 -1.1523 -7.8893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395423464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:41 Heat of formation + Delta-G solvation = -45.184396 kcal Electronic energy + Delta-G solvation = -14229.152432 eV Core-core repulsion = 11841.161502 eV Total energy + Delta-G solvation = -2387.990930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.47171 -37.02846 -34.11914 -32.78733 -29.33394 -28.56531 -26.23959 -23.78922 -23.58762 -22.51932 -21.37910 -18.41173 -17.01270 -16.25730 -15.75758 -15.45785 -15.35217 -14.13145 -13.76534 -13.53583 -13.25784 -12.72607 -12.33174 -12.25209 -12.19889 -11.62953 -11.51157 -11.41931 -11.18707 -10.72869 -10.62430 -10.46568 -10.11332 -10.09067 -9.96610 -8.85550 -8.63195 -8.24345 -8.20349 -6.46418 -4.15093 3.42830 3.45591 3.64456 4.34750 4.44257 4.53346 4.60973 4.81754 4.90903 4.91578 5.31712 5.44490 5.47076 5.51799 5.62893 5.67636 5.69886 5.86089 5.93037 5.93812 6.01315 6.12093 6.19299 6.27570 6.40025 6.48187 6.77751 7.13968 7.30254 7.66140 7.88881 8.17998 8.62983 8.80860 9.55661 10.93850 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042494 B = 0.005694 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.761087 B = 4916.224690 C = 5373.806393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 H 0.070 0.930 4 C -0.140 4.140 5 C -0.126 4.126 6 C 0.059 3.941 7 H 0.066 0.934 8 N -0.674 5.674 9 C 0.065 3.935 10 C 0.059 3.941 11 O -0.391 6.391 12 C 0.188 3.812 13 C -0.597 4.597 14 H 0.059 0.941 15 C 0.017 3.983 16 N -0.911 5.911 17 Si 1.079 2.921 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.286 1.286 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.356 0.644 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.039 0.961 33 H -0.004 1.004 34 H -0.006 1.006 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -1.933 14.985 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.089 0.911 4 C -0.178 4.178 5 C -0.164 4.164 6 C -0.051 4.051 7 H 0.084 0.916 8 N -0.308 5.308 9 C -0.064 4.064 10 C -0.019 4.019 11 O -0.310 6.310 12 C 0.114 3.886 13 C -0.635 4.635 14 H 0.078 0.922 15 C -0.186 4.186 16 N -0.547 5.547 17 Si 0.906 3.094 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.213 1.213 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.177 0.823 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.123 -1.600 14.230 15.994 hybrid contribution 1.589 -0.378 0.564 1.727 sum 8.712 -1.978 14.794 17.282 Atomic orbital electron populations 1.21466 0.93069 1.02041 1.02045 1.22592 0.96862 0.97860 0.96121 0.91120 1.22839 1.00624 0.97410 0.96882 1.23017 1.02112 0.96284 0.95006 1.23058 0.95331 0.96535 0.90215 0.91610 1.60668 1.24114 1.41386 1.04590 1.21973 0.94887 0.99822 0.89717 1.22353 0.95583 0.89038 0.94889 1.87814 1.61081 1.28735 1.53394 1.20258 0.86796 0.98343 0.83240 1.21893 1.28143 0.93899 1.19547 0.92248 1.25931 0.94668 1.05278 0.92740 1.70800 1.43203 1.00392 1.40274 0.83406 0.76264 0.73345 0.76389 1.20612 1.21195 1.21266 0.92060 0.92972 0.91625 0.91314 0.90602 0.89362 0.92317 0.82277 0.90725 0.94874 0.93567 0.94252 0.98618 0.98870 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.98 37.16 0.33 -1.20 16 2 C -0.12 -1.31 4.44 -89.81 -0.40 -1.71 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.14 -1.36 7.64 -25.92 -0.20 -1.56 16 5 C -0.13 -1.39 7.53 -25.92 -0.20 -1.59 16 6 C 0.06 0.74 4.00 -66.90 -0.27 0.48 16 7 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 8 N -0.67 -10.34 6.01 -105.87 -0.64 -10.98 16 9 C 0.07 1.03 5.97 -3.83 -0.02 1.01 16 10 C 0.06 1.13 6.28 37.15 0.23 1.37 16 11 O -0.39 -9.54 9.85 -35.23 -0.35 -9.89 16 12 C 0.19 5.22 5.00 36.01 0.18 5.40 16 13 C -0.60 -17.94 9.43 -34.44 -0.32 -18.26 16 14 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 15 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 16 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 17 Si 1.08 25.62 29.90 -169.99 -5.08 20.54 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 21 H 0.06 0.73 7.34 -51.93 -0.38 0.35 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.88 6.79 -51.93 -0.35 0.53 16 24 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.05 7.65 -51.93 -0.40 0.65 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.36 6.10 6.65 -39.29 -0.26 5.84 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.00 -0.11 8.01 -51.92 -0.42 -0.53 16 34 H -0.01 -0.18 8.00 -51.93 -0.42 -0.60 16 35 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -31.23 286.06 -7.69 -38.92 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.94 Total: 0.21 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.76 Total: -15.66 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.12 Total: -38.43 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.35 Total: -9.89 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.23 -7.69 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395423464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.260 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds