Wall clock time and date at job start Mon Mar 30 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 112.90694 * 2 1 4 4 C 1.53776 * 113.61652 * 131.24911 * 2 1 3 5 5 C 1.53780 * 87.08140 * 89.11431 * 4 2 1 6 6 C 1.53779 * 113.61379 * 228.75018 * 2 1 3 7 7 H 1.09000 * 113.68800 * 156.32367 * 6 2 1 8 8 N 1.46894 * 113.61663 * 25.43331 * 6 2 1 9 9 C 1.46901 * 111.00417 * 158.00087 * 8 6 2 10 10 C 1.52991 * 109.47407 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.47291 * 64.99614 * 10 9 8 12 12 C 1.42894 * 114.00235 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47460 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99441 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00075 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99886 * 179.73007 * 15 13 12 18 18 H 1.48494 * 109.47225 * 180.27306 * 17 15 13 19 19 H 1.48506 * 109.46866 * 300.27330 * 17 15 13 20 20 H 1.48498 * 109.47306 * 60.26614 * 17 15 13 21 21 H 1.08994 * 109.47270 * 191.24852 * 1 2 3 22 22 H 1.09002 * 109.47158 * 311.25425 * 1 2 3 23 23 H 1.08999 * 109.47028 * 71.24917 * 1 2 3 24 24 H 1.09007 * 113.61223 * 334.57099 * 4 2 1 25 25 H 1.08996 * 113.61647 * 203.66445 * 4 2 1 26 26 H 1.09002 * 113.61691 * 270.88603 * 5 4 2 27 27 H 1.09003 * 113.61350 * 139.97786 * 5 4 2 28 28 H 1.00899 * 111.00023 * 34.04122 * 8 6 2 29 29 H 1.09002 * 109.46943 * 59.99165 * 9 8 6 30 30 H 1.08997 * 109.46666 * 299.99824 * 9 8 6 31 31 H 1.09003 * 109.47267 * 305.00052 * 10 9 8 32 32 H 1.08998 * 109.47287 * 185.00104 * 10 9 8 33 33 H 1.09009 * 109.47133 * 60.00543 * 12 11 10 34 34 H 1.08998 * 109.47768 * 300.00964 * 12 11 10 35 35 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 2.0929 -2.0425 0.0001 6 6 2.1460 -0.9290 -1.0594 7 1 3.1590 -0.6508 -1.3500 8 7 1.2680 -1.1710 -2.2119 9 6 2.0436 -1.5975 -3.3843 10 6 1.0970 -1.8399 -4.5615 11 8 0.4842 -0.6062 -4.9419 12 6 -0.4233 -0.7222 -6.0395 13 6 -1.0070 0.6312 -6.3539 14 1 -0.7138 1.4937 -5.7738 15 6 -1.9153 0.7682 -7.3821 16 7 -2.2720 -0.2819 -8.0889 17 14 -2.6445 2.4444 -7.7670 18 1 -3.5922 2.3229 -8.9037 19 1 -3.3656 2.9563 -6.5739 20 1 -1.5554 3.3868 -8.1289 21 1 -0.3633 -1.0079 0.2004 22 1 -0.3633 0.6777 0.7726 23 1 -0.3633 0.3303 -0.9731 24 1 1.4945 -1.1086 1.9146 25 1 3.1590 -0.6498 1.3489 26 1 1.1568 -2.6009 0.0001 27 1 2.9717 -2.6874 0.0000 28 1 0.7142 -0.3543 -2.4223 29 1 2.5769 -2.5192 -3.1515 30 1 2.7604 -0.8199 -3.6482 31 1 0.3265 -2.5527 -4.2674 32 1 1.6603 -2.2409 -5.4041 33 1 -1.2254 -1.4119 -5.7765 34 1 0.1087 -1.0998 -6.9127 35 1 -1.8930 -1.1523 -7.8893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395423464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:40 Heat of formation + Delta-G solvation = -65.850166 kcal Electronic energy + Delta-G solvation = -14230.048567 eV Core-core repulsion = 11841.161502 eV Total energy + Delta-G solvation = -2388.887065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43594 -38.85111 -35.71036 -34.77400 -30.25997 -30.14348 -28.27416 -24.81539 -24.70206 -24.56668 -22.76465 -19.42393 -19.14411 -17.64649 -17.18894 -16.84153 -16.67828 -15.70477 -15.60189 -15.06884 -14.75938 -14.09677 -13.94201 -13.30987 -13.18895 -13.10933 -13.08690 -12.85844 -12.52821 -12.44430 -12.13341 -11.90629 -11.53724 -11.11201 -10.99424 -10.86383 -10.85471 -10.37956 -9.37929 -8.84829 -6.56082 1.52427 1.61373 1.82572 2.48858 3.02479 3.02914 3.21303 3.60648 3.71900 3.97439 3.98770 4.14479 4.27788 4.41332 4.47763 4.56651 4.60482 4.68503 4.76838 4.80676 4.85680 4.90026 4.97587 5.06735 5.12809 5.30513 5.47291 5.54682 5.64961 5.90133 6.16728 6.31103 6.36519 6.62179 7.25139 8.56266 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042494 B = 0.005694 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.761087 B = 4916.224690 C = 5373.806393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.118 4.118 3 H 0.074 0.926 4 C -0.126 4.126 5 C -0.122 4.122 6 C 0.049 3.951 7 H 0.071 0.929 8 N -0.683 5.683 9 C 0.075 3.925 10 C 0.052 3.948 11 O -0.402 6.402 12 C 0.198 3.802 13 C -0.624 4.624 14 H 0.054 0.946 15 C -0.028 4.028 16 N -0.928 5.928 17 Si 1.129 2.871 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.267 1.267 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.342 0.658 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.049 0.951 33 H -0.019 1.019 34 H -0.019 1.019 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -1.229 16.192 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 H 0.092 0.908 4 C -0.163 4.163 5 C -0.161 4.161 6 C -0.061 4.061 7 H 0.089 0.911 8 N -0.315 5.315 9 C -0.055 4.055 10 C -0.025 4.025 11 O -0.322 6.322 12 C 0.123 3.877 13 C -0.661 4.661 14 H 0.072 0.928 15 C -0.226 4.226 16 N -0.564 5.564 17 Si 0.947 3.053 18 H -0.201 1.201 19 H -0.192 1.192 20 H -0.192 1.192 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.161 0.839 29 H 0.121 0.879 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.067 0.933 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.859 -0.932 15.469 17.377 hybrid contribution 1.426 -0.679 0.237 1.597 sum 9.285 -1.611 15.706 18.317 Atomic orbital electron populations 1.21428 0.93717 1.02031 1.01194 1.22624 0.96371 0.98266 0.96486 0.90765 1.22803 1.01540 0.95642 0.96363 1.22974 1.02101 0.96303 0.94695 1.23263 0.95149 0.98134 0.89536 0.91075 1.60740 1.24773 1.40835 1.05128 1.21941 0.93832 1.01114 0.88568 1.22667 0.95991 0.87140 0.96693 1.87775 1.60633 1.31666 1.52123 1.19938 0.86823 0.97108 0.83841 1.22257 1.29049 0.94648 1.20177 0.92755 1.27624 0.94503 1.08398 0.92058 1.70929 1.43888 1.00508 1.41103 0.82816 0.76338 0.69064 0.77064 1.20095 1.19172 1.19186 0.92458 0.91553 0.93886 0.90378 0.88965 0.90453 0.91119 0.83870 0.87908 0.95085 0.93806 0.93288 1.00132 1.00102 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.98 71.98 0.65 -2.27 16 2 C -0.12 -2.51 4.44 -10.27 -0.05 -2.56 16 3 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.13 -2.12 7.64 31.12 0.24 -1.88 16 5 C -0.12 -2.44 7.53 31.12 0.23 -2.21 16 6 C 0.05 1.16 4.00 45.44 0.18 1.34 16 7 H 0.07 1.62 7.89 -2.39 -0.02 1.60 16 8 N -0.68 -20.55 6.01 -488.87 -2.94 -23.49 16 9 C 0.07 2.27 5.97 86.30 0.52 2.78 16 10 C 0.05 1.99 6.28 71.98 0.45 2.44 16 11 O -0.40 -19.97 9.85 -148.98 -1.47 -21.44 16 12 C 0.20 11.28 5.00 71.24 0.36 11.64 16 13 C -0.62 -37.97 9.43 25.60 0.24 -37.73 16 14 H 0.05 3.29 7.81 -2.91 -0.02 3.26 16 15 C -0.03 -1.68 5.46 84.65 0.46 -1.21 16 16 N -0.93 -57.99 13.65 21.45 0.29 -57.70 16 17 Si 1.13 50.61 29.90 68.60 2.05 52.66 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H 0.06 1.34 7.34 -2.39 -0.02 1.32 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.04 1.18 6.79 -2.39 -0.02 1.16 16 24 H 0.08 1.20 8.10 -2.38 -0.02 1.18 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.73 7.65 -2.39 -0.02 1.71 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.34 11.85 6.65 -89.69 -0.60 11.26 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H -0.02 -1.11 8.01 -2.38 -0.02 -1.13 16 34 H -0.02 -1.09 8.00 -2.39 -0.02 -1.11 16 35 H 0.26 16.13 7.22 -92.70 -0.67 15.46 16 Total: -1.00 -66.66 286.06 1.77 -64.89 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.55 Total: 14.73 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.28 Total: -29.65 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.64 Total: -81.19 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.47 Total: -21.44 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -66.66 1.77 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395423464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.965 kcal (2) G-P(sol) polarization free energy of solvation -66.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds