Wall clock time and date at job start Mon Mar 30 2020 04:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 112.90783 * 2 1 4 4 C 1.53786 * 113.61314 * 228.74940 * 2 1 3 5 5 C 1.53774 * 87.08008 * 270.88161 * 4 2 1 6 6 C 1.53780 * 87.08731 * 334.56867 * 5 4 2 7 7 H 1.08994 * 113.68907 * 270.87640 * 6 5 4 8 8 N 1.46903 * 113.61567 * 139.97883 * 6 5 4 9 9 C 1.46899 * 110.99848 * 107.50971 * 8 6 5 10 10 C 1.52996 * 109.46994 * 179.97438 * 9 8 6 11 11 O 1.42901 * 109.47091 * 64.99805 * 10 9 8 12 12 C 1.42905 * 114.00134 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47264 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99574 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46762 * 60.00562 * 17 15 13 19 19 H 1.48506 * 109.46725 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00217 * 17 15 13 21 21 H 1.09001 * 109.47241 * 288.74334 * 1 2 3 22 22 H 1.08997 * 109.47656 * 48.74821 * 1 2 3 23 23 H 1.09005 * 109.47064 * 168.74970 * 1 2 3 24 24 H 1.08998 * 113.61507 * 25.43380 * 4 2 1 25 25 H 1.08999 * 113.60870 * 156.24853 * 4 2 1 26 26 H 1.09006 * 113.61714 * 220.01793 * 5 4 2 27 27 H 1.08999 * 113.61610 * 89.11851 * 5 4 2 28 28 H 1.00904 * 110.99406 * 231.45982 * 8 6 5 29 29 H 1.08995 * 109.47275 * 59.99753 * 9 8 6 30 30 H 1.09003 * 109.46741 * 299.99407 * 9 8 6 31 31 H 1.08994 * 109.47303 * 304.99818 * 10 9 8 32 32 H 1.09002 * 109.47060 * 184.99348 * 10 9 8 33 33 H 1.09001 * 109.47103 * 300.00246 * 12 11 10 34 34 H 1.09004 * 109.47054 * 59.99750 * 12 11 10 35 35 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 2.0929 -2.0425 -0.0001 6 6 2.1460 -0.9291 1.0594 7 1 3.1585 -0.6491 1.3500 8 7 1.2680 -1.1712 2.2119 9 6 2.0496 -1.5286 3.4033 10 6 1.1028 -1.7719 4.5802 11 8 0.2868 -2.9128 4.3071 12 6 -0.6380 -3.2290 5.3497 13 6 -1.4423 -4.4415 4.9572 14 1 -1.2652 -4.9222 4.0064 15 6 -2.4041 -4.9369 5.8118 16 7 -2.6201 -4.3511 6.9693 17 14 -3.4016 -6.4394 5.3249 18 1 -2.4886 -7.5900 5.1066 19 1 -4.3625 -6.7679 6.4084 20 1 -4.1469 -6.1542 4.0726 21 1 -0.3634 0.3302 0.9732 22 1 -0.3634 0.6776 -0.7726 23 1 -0.3633 -1.0080 -0.2005 24 1 1.4945 -1.1086 -1.9146 25 1 3.1585 -0.6489 -1.3501 26 1 2.9717 -2.6875 -0.0001 27 1 1.1569 -2.6010 0.0000 28 1 0.6793 -0.3717 2.3921 29 1 2.7314 -0.7143 3.6482 30 1 2.6221 -2.4344 3.2038 31 1 0.4684 -0.8973 4.7230 32 1 1.6853 -1.9499 5.4842 33 1 -0.0914 -3.4372 6.2694 34 1 -1.3086 -2.3845 5.5089 35 1 -3.2970 -4.6994 7.5703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395423466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:42 Heat of formation + Delta-G solvation = -58.900319 kcal Electronic energy + Delta-G solvation = -14207.393554 eV Core-core repulsion = 11818.807857 eV Total energy + Delta-G solvation = -2388.585697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39137 -38.59068 -35.50276 -34.63527 -30.26399 -30.23447 -28.54689 -24.74077 -24.55863 -24.39095 -22.78757 -19.32897 -18.60050 -17.55104 -17.21639 -16.74901 -16.49940 -16.17269 -15.38977 -14.96523 -14.61790 -13.79231 -13.71788 -13.48514 -13.15991 -13.07561 -12.97069 -12.82551 -12.64369 -12.31568 -12.26748 -11.93776 -11.48660 -11.26816 -11.07385 -10.93785 -10.83458 -10.18320 -9.19961 -8.31160 -6.43268 1.39730 1.44938 1.53307 2.35791 3.02330 3.20658 3.31547 3.63308 3.74880 4.01507 4.05926 4.25857 4.30578 4.54201 4.60698 4.63624 4.68144 4.77044 4.83844 4.87206 4.99929 5.01400 5.09119 5.16194 5.19662 5.35301 5.50366 5.55895 5.59800 5.98292 6.26300 6.51422 6.59389 6.87270 7.29016 8.81071 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.005772 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.390567 B = 4850.165661 C = 5198.327749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.135 4.135 6 C 0.056 3.944 7 H 0.080 0.920 8 N -0.684 5.684 9 C 0.074 3.926 10 C 0.055 3.945 11 O -0.396 6.396 12 C 0.208 3.792 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.983 3.017 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.266 1.266 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.341 0.659 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.047 0.953 33 H -0.017 1.017 34 H -0.017 1.017 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 9.191 -12.703 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.129 4.129 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.173 4.173 6 C -0.054 4.054 7 H 0.098 0.902 8 N -0.318 5.318 9 C -0.055 4.055 10 C -0.023 4.023 11 O -0.316 6.316 12 C 0.133 3.867 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.191 1.191 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.162 0.838 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.001 0.999 34 H 0.001 0.999 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.243 8.434 -12.863 17.945 hybrid contribution -0.220 0.298 0.855 0.932 sum 9.022 8.732 -12.007 17.373 Atomic orbital electron populations 1.21454 0.93852 1.01634 1.01639 1.22594 0.96168 0.98349 0.95827 0.89470 1.22815 1.01663 0.95695 0.96308 1.23016 1.01380 0.96829 0.96091 1.23210 0.95468 0.97298 0.89393 0.90204 1.60489 1.23079 1.43453 1.04729 1.21923 0.93990 1.00605 0.88957 1.22603 0.93193 0.88861 0.97610 1.87917 1.52185 1.47163 1.44323 1.19798 0.86688 0.94481 0.85709 1.21353 1.19771 1.12908 1.04478 0.92305 1.25955 0.97758 1.01026 0.94410 1.70065 1.34353 1.42440 1.10202 0.85244 0.77972 0.78039 0.78210 1.19036 1.19777 1.19108 0.92878 0.91329 0.93647 0.90901 0.88682 0.92020 0.91622 0.83837 0.91500 0.91404 0.94301 0.93526 0.99882 0.99900 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.98 71.98 0.65 -2.11 16 2 C -0.11 -2.13 4.43 -10.26 -0.05 -2.18 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.13 -2.29 7.64 31.12 0.24 -2.05 16 5 C -0.13 -3.24 7.53 31.12 0.23 -3.01 16 6 C 0.06 1.31 4.03 45.44 0.18 1.49 16 7 H 0.08 1.65 7.87 -2.39 -0.02 1.63 16 8 N -0.68 -20.34 6.02 -488.86 -2.94 -23.28 16 9 C 0.07 2.24 5.91 86.30 0.51 2.75 16 10 C 0.05 2.09 6.22 71.98 0.45 2.54 16 11 O -0.40 -20.35 10.27 -148.98 -1.53 -21.88 16 12 C 0.21 12.20 5.69 71.24 0.41 12.60 16 13 C -0.55 -33.87 9.43 25.60 0.24 -33.63 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.01 0.41 5.46 84.65 0.46 0.87 16 16 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 17 Si 0.98 45.52 29.54 68.60 2.03 47.55 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H 0.05 1.21 6.72 -2.39 -0.02 1.19 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.15 7.34 -2.38 -0.02 1.13 16 24 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.07 1.93 7.65 -2.39 -0.02 1.91 16 28 H 0.34 9.63 6.93 -89.69 -0.62 9.01 16 29 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.06 287.90 1.58 -66.47 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.42 Total: 10.78 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.32 Total: -22.73 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.66 Total: -80.19 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.53 Total: -21.88 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.06 1.58 -66.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395423466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.573 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds