Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47505 * 2 1 4 4 H 1.09004 * 109.46616 * 304.99525 * 3 2 1 5 5 O 1.42903 * 109.47086 * 64.99578 * 3 2 1 6 6 C 1.52996 * 109.47472 * 184.99504 * 3 2 1 7 7 N 1.46897 * 109.47044 * 179.97438 * 6 3 2 8 8 C 1.48535 * 111.00063 * 287.39798 * 7 6 3 9 9 C 1.54942 * 103.22593 * 200.27918 * 8 7 6 10 10 C 1.54599 * 102.92043 * 37.41662 * 9 8 7 11 11 H 1.09000 * 110.39177 * 97.00373 * 10 9 8 12 12 C 1.50703 * 110.30641 * 219.12506 * 10 9 8 13 13 H 1.07994 * 119.99603 * 115.71512 * 12 10 9 14 14 C 1.37875 * 119.99838 * 295.71656 * 12 10 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.47907 * 110.99848 * 170.00319 * 7 6 3 21 21 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47180 * 300.00371 * 1 2 3 23 23 H 1.09005 * 109.46681 * 60.00499 * 1 2 3 24 24 H 1.08992 * 109.47782 * 239.99385 * 2 1 3 25 25 H 1.09005 * 109.46681 * 119.99500 * 2 1 3 26 26 H 0.96694 * 114.00179 * 60.00322 * 5 3 2 27 27 H 1.09003 * 109.46720 * 60.00047 * 6 3 2 28 28 H 1.08992 * 109.47010 * 300.00068 * 6 3 2 29 29 H 1.09004 * 110.66774 * 318.71393 * 8 7 6 30 30 H 1.08997 * 110.66798 * 81.68011 * 8 7 6 31 31 H 1.08997 * 110.72463 * 279.05238 * 9 8 7 32 32 H 1.09007 * 110.72230 * 155.76864 * 9 8 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.08999 * 109.91413 * 26.49223 * 20 7 6 35 35 H 1.08998 * 109.91352 * 265.20078 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1256 7 7 4.0545 2.8293 -0.1262 8 6 3.7339 3.5067 -1.4086 9 6 4.7354 4.6883 -1.4455 10 6 6.0151 4.0760 -0.8310 11 1 6.6940 3.7467 -1.6176 12 6 6.6983 5.0795 0.0620 13 1 6.7845 4.8888 1.1215 14 6 7.2131 6.2410 -0.4737 15 7 7.1085 6.4730 -1.7640 16 14 8.0605 7.4845 0.6331 17 1 8.0475 6.9905 2.0335 18 1 7.3427 8.7825 0.5599 19 1 9.4645 7.6694 0.1860 20 6 5.5281 2.8706 -0.0058 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5138 0.8901 26 1 2.0141 1.6543 2.0139 27 1 3.8533 0.9569 -1.0570 28 1 3.9994 0.9053 0.7162 29 1 3.9003 2.8348 -2.2507 30 1 2.7063 3.8700 -1.4053 31 1 4.3749 5.5185 -0.8382 32 1 4.9157 5.0092 -2.4715 33 1 6.6688 5.8270 -2.3387 34 1 5.9589 1.9510 -0.4019 35 1 5.8118 2.9967 1.0390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = -66.552659 kcal Electronic energy + Delta-G solvation = -14702.907814 eV Core-core repulsion = 12313.990286 eV Total energy + Delta-G solvation = -2388.917528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.74374 -37.02545 -33.42625 -32.72890 -30.53471 -28.28079 -27.15761 -24.00165 -22.96382 -21.38803 -20.15223 -19.57095 -16.86081 -16.25510 -15.88303 -15.11927 -14.78741 -13.95766 -13.78371 -13.68917 -12.92452 -12.69250 -12.26243 -12.20200 -11.77952 -11.48260 -11.12655 -11.09888 -10.96886 -10.70044 -10.51653 -10.42306 -10.07870 -9.81973 -9.73321 -9.45520 -8.41124 -8.30348 -7.74595 -6.28530 -3.99310 3.47841 3.51643 3.65361 4.27678 4.58076 4.68382 4.86661 5.03507 5.07876 5.31859 5.44298 5.47831 5.63317 5.72198 5.77035 5.81280 5.82780 5.95448 6.09297 6.14101 6.15173 6.24703 6.44093 6.72731 6.89428 7.03739 7.28313 7.35149 7.68561 7.81590 7.90914 8.29383 8.50307 8.94479 9.71646 11.09847 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.064547 B = 0.006292 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.689535 B = 4448.714673 C = 4563.509413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.114 3.886 4 H 0.093 0.907 5 O -0.546 6.546 6 C 0.013 3.987 7 N -0.504 5.504 8 C 0.033 3.967 9 C -0.109 4.109 10 C 0.024 3.976 11 H 0.019 0.981 12 C -0.585 4.585 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 1.073 2.927 17 H -0.290 1.290 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.051 3.949 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.368 0.632 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.017 0.983 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 -11.536 2.514 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.054 3.946 4 H 0.111 0.889 5 O -0.350 6.350 6 C -0.116 4.116 7 N -0.228 5.228 8 C -0.095 4.095 9 C -0.148 4.148 10 C 0.005 3.995 11 H 0.037 0.963 12 C -0.624 4.624 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.553 5.553 16 Si 0.902 3.098 17 H -0.216 1.216 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.076 4.076 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.214 0.786 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.088 -9.415 2.552 13.332 hybrid contribution -0.050 -2.467 -0.445 2.507 sum -9.138 -11.881 2.107 15.136 Atomic orbital electron populations 1.21683 0.95193 1.01077 1.02456 1.22243 0.97053 0.97740 1.02439 1.21888 0.92783 0.91626 0.88301 0.88870 1.86600 1.76009 1.57307 1.15060 1.22995 0.96208 0.91873 1.00511 1.64700 1.12633 1.12474 1.32955 1.23304 0.99923 0.96817 0.89431 1.22682 0.95912 0.96402 0.99791 1.19649 0.92741 0.92467 0.94607 0.96291 1.22047 1.39796 1.05540 0.94992 0.93070 1.25785 0.96252 0.98473 0.98129 1.70737 1.41840 1.38465 1.04245 0.83485 0.76272 0.75564 0.74474 1.21552 1.21413 1.21517 1.22971 0.85619 0.97488 1.01499 0.93127 0.92008 0.92835 0.91417 0.91761 0.78552 0.94707 0.91251 0.95446 0.91518 0.91288 0.93013 0.91798 0.96446 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.81 37.16 0.36 -1.05 16 2 C -0.16 -1.60 5.61 -26.73 -0.15 -1.75 16 3 C 0.11 1.52 3.00 -26.73 -0.08 1.44 16 4 H 0.09 1.34 7.36 -51.93 -0.38 0.96 16 5 O -0.55 -7.95 12.74 -35.23 -0.45 -8.40 16 6 C 0.01 0.21 4.37 -3.83 -0.02 0.19 16 7 N -0.50 -9.90 5.11 -230.45 -1.18 -11.08 16 8 C 0.03 0.65 5.91 -1.89 -0.01 0.64 16 9 C -0.11 -2.60 5.57 -24.87 -0.14 -2.74 16 10 C 0.02 0.62 2.54 -90.41 -0.23 0.39 16 11 H 0.02 0.52 7.95 -51.93 -0.41 0.10 16 12 C -0.59 -16.66 8.38 -34.44 -0.29 -16.95 16 13 H 0.05 1.47 7.34 -52.49 -0.39 1.08 16 14 C 0.02 0.50 5.34 -17.82 -0.10 0.40 16 15 N -0.92 -27.71 13.45 55.43 0.75 -26.97 16 16 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.05 1.13 6.31 -2.75 -0.02 1.11 16 21 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.37 4.16 9.04 45.56 0.41 4.57 16 27 H 0.03 0.52 7.83 -51.93 -0.41 0.11 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.03 0.51 7.81 -51.93 -0.41 0.10 16 30 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 31 H 0.07 1.80 7.86 -51.93 -0.41 1.39 16 32 H 0.05 1.23 7.10 -51.93 -0.37 0.86 16 33 H 0.27 8.08 5.65 -40.82 -0.23 7.85 16 34 H 0.02 0.35 7.77 -51.93 -0.40 -0.05 16 35 H 0.07 1.65 7.39 -51.93 -0.38 1.27 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -31.03 278.74 -7.52 -38.54 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.09 Total: 1.43 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -0.66 Total: -18.31 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.43 Total: -38.05 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.45 Total: -8.40 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.03 -7.52 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.008 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds