Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47505 * 2 1 4 4 H 1.09004 * 109.46616 * 304.99525 * 3 2 1 5 5 O 1.42903 * 109.47086 * 64.99578 * 3 2 1 6 6 C 1.52996 * 109.47472 * 184.99504 * 3 2 1 7 7 N 1.46897 * 109.47044 * 179.97438 * 6 3 2 8 8 C 1.48535 * 111.00063 * 287.39798 * 7 6 3 9 9 C 1.54942 * 103.22593 * 200.27918 * 8 7 6 10 10 C 1.54599 * 102.92043 * 37.41662 * 9 8 7 11 11 H 1.09000 * 110.39177 * 97.00373 * 10 9 8 12 12 C 1.50703 * 110.30641 * 219.12506 * 10 9 8 13 13 H 1.07994 * 119.99603 * 115.71512 * 12 10 9 14 14 C 1.37875 * 119.99838 * 295.71656 * 12 10 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.47907 * 110.99848 * 170.00319 * 7 6 3 21 21 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47180 * 300.00371 * 1 2 3 23 23 H 1.09005 * 109.46681 * 60.00499 * 1 2 3 24 24 H 1.08992 * 109.47782 * 239.99385 * 2 1 3 25 25 H 1.09005 * 109.46681 * 119.99500 * 2 1 3 26 26 H 0.96694 * 114.00179 * 60.00322 * 5 3 2 27 27 H 1.09003 * 109.46720 * 60.00047 * 6 3 2 28 28 H 1.08992 * 109.47010 * 300.00068 * 6 3 2 29 29 H 1.09004 * 110.66774 * 318.71393 * 8 7 6 30 30 H 1.08997 * 110.66798 * 81.68011 * 8 7 6 31 31 H 1.08997 * 110.72463 * 279.05238 * 9 8 7 32 32 H 1.09007 * 110.72230 * 155.76864 * 9 8 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.08999 * 109.91413 * 26.49223 * 20 7 6 35 35 H 1.08998 * 109.91352 * 265.20078 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1256 7 7 4.0545 2.8293 -0.1262 8 6 3.7339 3.5067 -1.4086 9 6 4.7354 4.6883 -1.4455 10 6 6.0151 4.0760 -0.8310 11 1 6.6940 3.7467 -1.6176 12 6 6.6983 5.0795 0.0620 13 1 6.7845 4.8888 1.1215 14 6 7.2131 6.2410 -0.4737 15 7 7.1085 6.4730 -1.7640 16 14 8.0605 7.4845 0.6331 17 1 8.0475 6.9905 2.0335 18 1 7.3427 8.7825 0.5599 19 1 9.4645 7.6694 0.1860 20 6 5.5281 2.8706 -0.0058 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5138 0.8901 26 1 2.0141 1.6543 2.0139 27 1 3.8533 0.9569 -1.0570 28 1 3.9994 0.9053 0.7162 29 1 3.9003 2.8348 -2.2507 30 1 2.7063 3.8700 -1.4053 31 1 4.3749 5.5185 -0.8382 32 1 4.9157 5.0092 -2.4715 33 1 6.6688 5.8270 -2.3387 34 1 5.9589 1.9510 -0.4019 35 1 5.8118 2.9967 1.0390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = -89.301823 kcal Electronic energy + Delta-G solvation = -14703.894292 eV Core-core repulsion = 12313.990286 eV Total energy + Delta-G solvation = -2389.904005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21564 -38.35057 -35.36534 -33.69067 -32.21102 -30.09148 -28.51541 -26.02310 -24.22315 -22.45321 -21.69840 -21.46142 -18.98452 -17.51407 -16.96525 -16.49399 -16.28366 -15.69019 -15.30163 -14.95933 -14.54734 -14.09587 -13.86315 -13.38841 -13.15846 -12.91749 -12.80446 -12.53699 -12.46272 -12.14461 -11.92521 -11.84551 -11.79115 -11.60158 -11.51481 -10.73619 -10.53003 -10.46449 -9.28461 -8.58239 -6.29824 1.53360 1.62423 1.78980 2.58224 2.96511 3.21646 3.65902 3.71483 3.95070 4.10363 4.16248 4.19629 4.30225 4.34850 4.42089 4.60686 4.65885 4.69668 4.81728 4.87719 4.94377 4.99532 5.08973 5.14770 5.29161 5.35302 5.40709 5.45684 6.00324 6.11042 6.19704 6.25229 6.67979 6.97158 7.49001 8.80856 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.064547 B = 0.006292 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.689535 B = 4448.714673 C = 4563.509413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.118 3.882 4 H 0.081 0.919 5 O -0.566 6.566 6 C 0.013 3.987 7 N -0.516 5.516 8 C 0.046 3.954 9 C -0.103 4.103 10 C 0.012 3.988 11 H -0.004 1.004 12 C -0.600 4.600 13 H 0.044 0.956 14 C -0.032 4.032 15 N -0.939 5.939 16 Si 1.118 2.882 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.063 3.937 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.382 0.618 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -12.864 3.215 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.059 3.941 4 H 0.099 0.901 5 O -0.373 6.373 6 C -0.116 4.116 7 N -0.240 5.240 8 C -0.081 4.081 9 C -0.142 4.142 10 C -0.007 4.007 11 H 0.014 0.986 12 C -0.638 4.638 13 H 0.062 0.938 14 C -0.230 4.230 15 N -0.577 5.577 16 Si 0.941 3.059 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.065 4.065 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.230 0.770 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.800 -10.777 3.259 14.927 hybrid contribution 0.148 -2.099 -0.662 2.206 sum -9.652 -12.875 2.596 16.300 Atomic orbital electron populations 1.21674 0.94776 1.01993 1.01879 1.22159 0.97295 0.95493 1.03626 1.21861 0.91207 0.93443 0.87617 0.90067 1.86565 1.76330 1.58331 1.16041 1.23143 0.97550 0.89246 1.01637 1.64654 1.10866 1.15634 1.32819 1.23171 0.99191 0.95377 0.90391 1.22452 0.96401 0.97031 0.98296 1.19676 0.92957 0.93724 0.94296 0.98570 1.22393 1.39932 1.06404 0.95078 0.93794 1.27188 0.96571 1.00589 0.98617 1.70849 1.43174 1.38637 1.05063 0.82908 0.75771 0.73663 0.73586 1.19883 1.20752 1.20452 1.22711 0.87408 0.96394 1.00002 0.91463 0.92823 0.93228 0.90385 0.90397 0.77023 0.93671 0.89843 0.93649 0.90231 0.94296 0.93998 0.92860 0.94772 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.81 71.98 0.71 -1.72 16 2 C -0.15 -2.55 5.61 30.60 0.17 -2.37 16 3 C 0.12 2.86 3.00 30.59 0.09 2.95 16 4 H 0.08 2.16 7.36 -2.39 -0.02 2.14 16 5 O -0.57 -15.36 12.74 -148.98 -1.90 -17.26 16 6 C 0.01 0.35 4.37 86.30 0.38 0.73 16 7 N -0.52 -19.48 5.11 -883.02 -4.51 -23.99 16 8 C 0.05 1.78 5.91 86.65 0.51 2.30 16 9 C -0.10 -4.99 5.57 31.80 0.18 -4.82 16 10 C 0.01 0.65 2.54 -10.66 -0.03 0.62 16 11 H 0.00 -0.21 7.95 -2.39 -0.02 -0.23 16 12 C -0.60 -34.70 8.38 25.60 0.21 -34.49 16 13 H 0.04 2.54 7.34 -2.91 -0.02 2.52 16 14 C -0.03 -1.84 5.34 84.65 0.45 -1.39 16 15 N -0.94 -57.93 13.45 21.45 0.29 -57.64 16 16 Si 1.12 51.63 29.90 68.60 2.05 53.68 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.06 2.69 6.31 86.44 0.55 3.24 16 21 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.38 7.77 9.04 -74.06 -0.67 7.10 16 27 H 0.05 1.19 7.83 -2.39 -0.02 1.17 16 28 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 29 H 0.05 1.59 7.81 -2.38 -0.02 1.57 16 30 H 0.08 2.87 7.79 -2.39 -0.02 2.85 16 31 H 0.04 2.08 7.86 -2.39 -0.02 2.06 16 32 H 0.04 2.06 7.10 -2.38 -0.02 2.04 16 33 H 0.26 16.09 5.65 -92.71 -0.52 15.57 16 34 H 0.03 1.34 7.77 -2.39 -0.02 1.32 16 35 H 0.06 2.75 7.39 -2.39 -0.02 2.73 16 Total: -1.00 -66.73 278.74 -0.22 -66.96 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.63 Total: 13.20 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.22 Total: -34.95 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -4.22 Total: -81.63 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.90 Total: -17.26 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -66.73 -0.22 -66.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.344 kcal (2) G-P(sol) polarization free energy of solvation -66.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds