Wall clock time and date at job start Mon Mar 30 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 H 1.09004 * 109.47208 * 55.00348 * 3 2 1 5 5 O 1.42905 * 109.47403 * 295.00373 * 3 2 1 6 6 C 1.53003 * 109.47266 * 175.00218 * 3 2 1 7 7 N 1.46900 * 109.47110 * 181.83820 * 6 3 2 8 8 C 1.48561 * 110.99921 * 175.66914 * 7 6 3 9 9 C 1.54389 * 104.59320 * 200.95732 * 8 7 6 10 10 C 1.54261 * 105.06038 * 23.85197 * 9 8 7 11 11 H 1.08995 * 110.32331 * 241.00340 * 10 9 8 12 12 C 1.50694 * 110.32369 * 118.89402 * 10 9 8 13 13 H 1.08003 * 120.00260 * 241.45018 * 12 10 9 14 14 C 1.37875 * 120.00228 * 61.45203 * 12 10 9 15 15 N 1.31521 * 119.99870 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00500 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47540 * 270.00473 * 16 14 12 18 18 H 1.48500 * 109.47079 * 150.00280 * 16 14 12 19 19 H 1.48507 * 109.46755 * 30.00555 * 16 14 12 20 20 C 1.48560 * 111.00488 * 60.24698 * 7 6 3 21 21 H 1.09002 * 109.47278 * 59.99312 * 1 2 3 22 22 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46730 * 300.00026 * 1 2 3 24 24 H 1.09003 * 109.46730 * 239.99973 * 2 1 3 25 25 H 1.09002 * 109.47278 * 120.00688 * 2 1 3 26 26 H 0.96704 * 113.99858 * 299.99840 * 5 3 2 27 27 H 1.09001 * 109.47068 * 61.83619 * 6 3 2 28 28 H 1.08996 * 109.46788 * 301.83538 * 6 3 2 29 29 H 1.09001 * 110.41401 * 82.17898 * 8 7 6 30 30 H 1.08999 * 110.50982 * 319.78080 * 8 7 6 31 31 H 1.08999 * 110.32153 * 264.95556 * 9 8 7 32 32 H 1.09000 * 110.31907 * 142.74534 * 9 8 7 33 33 H 0.96995 * 119.99559 * 359.97438 * 15 14 12 34 34 H 1.09003 * 110.40740 * 40.25882 * 20 7 6 35 35 H 1.09002 * 110.40677 * 277.82292 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 3.5649 1.4442 0.1257 7 7 4.0510 2.8298 0.1699 8 6 5.5186 2.8721 0.3961 9 6 5.7866 4.2893 0.9468 10 6 4.4463 4.7398 1.5634 11 1 4.0790 5.6336 1.0591 12 6 4.6105 5.0021 3.0382 13 1 4.0477 4.4233 3.7556 14 6 5.4792 5.9810 3.4718 15 7 6.1642 6.6862 2.5982 16 14 5.6823 6.3067 5.3000 17 1 4.7014 7.3346 5.7317 18 1 7.0596 6.7943 5.5659 19 1 5.4475 5.0501 6.0557 20 6 3.4812 3.5570 1.3334 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.0141 1.6543 -2.0139 27 1 4.0008 0.9335 -0.7330 28 1 3.8546 0.9281 1.0410 29 1 6.0524 2.7217 -0.5423 30 1 5.8145 2.1185 1.1259 31 1 6.0764 4.9609 0.1387 32 1 6.5633 4.2579 1.7110 33 1 6.0585 6.5174 1.6489 34 1 3.4563 2.9105 2.2106 35 1 2.4809 3.9222 1.1006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:39 Heat of formation + Delta-G solvation = -67.497027 kcal Electronic energy + Delta-G solvation = -14777.509878 eV Core-core repulsion = 12388.551400 eV Total energy + Delta-G solvation = -2388.958478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.77949 -36.99479 -33.46852 -32.72336 -30.52753 -28.27763 -26.96780 -24.27641 -22.87703 -21.38162 -20.19528 -19.39468 -16.90515 -16.13405 -15.80248 -15.22298 -14.52214 -14.29756 -13.75618 -13.65235 -13.07527 -12.55681 -12.22164 -12.11286 -11.89686 -11.52008 -11.17916 -11.05526 -10.90557 -10.75084 -10.49065 -10.37288 -10.10482 -9.82544 -9.61595 -9.44196 -8.43735 -8.29762 -7.84722 -6.31485 -4.03521 3.44118 3.47044 3.62744 4.29808 4.54562 4.69404 4.88216 5.06447 5.09593 5.37222 5.41713 5.48106 5.66449 5.74327 5.80139 5.83451 5.85783 5.96543 6.13558 6.17481 6.23163 6.34281 6.42258 6.76695 6.92919 6.98505 7.32763 7.47388 7.60732 7.72732 7.88792 8.30234 8.45472 8.91751 9.69008 11.07418 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045928 B = 0.006983 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.503493 B = 4008.776773 C = 4314.436271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.098 0.902 5 O -0.547 6.547 6 C 0.013 3.987 7 N -0.506 5.506 8 C 0.035 3.965 9 C -0.112 4.112 10 C 0.032 3.968 11 H 0.024 0.976 12 C -0.595 4.595 13 H 0.047 0.953 14 C 0.019 3.981 15 N -0.912 5.912 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.285 1.285 19 H -0.290 1.290 20 C 0.048 3.952 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.367 0.633 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.274 0.726 34 H 0.034 0.966 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.051 -12.380 -5.028 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.116 0.884 5 O -0.351 6.351 6 C -0.117 4.117 7 N -0.230 5.230 8 C -0.092 4.092 9 C -0.151 4.151 10 C 0.013 3.987 11 H 0.042 0.958 12 C -0.634 4.634 13 H 0.066 0.934 14 C -0.185 4.185 15 N -0.548 5.548 16 Si 0.898 3.102 17 H -0.215 1.215 18 H -0.210 1.210 19 H -0.217 1.217 20 C -0.079 4.079 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.213 0.787 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.707 -10.793 -4.024 12.855 hybrid contribution -0.228 -1.911 -0.646 2.030 sum -5.935 -12.704 -4.670 14.779 Atomic orbital electron populations 1.21685 0.95158 1.01086 1.02519 1.22231 0.97112 0.97610 1.02421 1.21981 0.92761 0.91925 0.88349 0.88398 1.86617 1.76123 1.57263 1.15066 1.22963 0.96108 0.92020 1.00572 1.65412 1.05154 1.10917 1.41521 1.23102 0.88711 0.98980 0.98455 1.22501 1.01044 0.92913 0.98649 1.19527 0.90079 0.92595 0.96485 0.95761 1.22042 1.28174 1.22279 0.90897 0.93437 1.25765 0.93216 0.93073 1.06494 1.70737 1.40180 1.40050 1.03851 0.83539 0.76570 0.75762 0.74324 1.21461 1.21036 1.21660 1.23158 0.98925 0.96364 0.89447 0.92056 0.93111 0.92715 0.91831 0.91320 0.78680 0.91338 0.94520 0.91958 0.94977 0.93711 0.91374 0.91502 0.94807 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.81 37.16 0.36 -1.14 16 2 C -0.16 -1.67 5.61 -26.74 -0.15 -1.82 16 3 C 0.11 1.52 2.81 -26.73 -0.08 1.45 16 4 H 0.10 1.55 6.85 -51.93 -0.36 1.19 16 5 O -0.55 -7.99 12.77 -35.23 -0.45 -8.44 16 6 C 0.01 0.20 4.56 -3.82 -0.02 0.18 16 7 N -0.51 -9.87 5.34 -229.96 -1.23 -11.10 16 8 C 0.04 0.71 6.49 -2.18 -0.01 0.69 16 9 C -0.11 -2.68 5.03 -25.34 -0.13 -2.81 16 10 C 0.03 0.83 2.65 -90.39 -0.24 0.60 16 11 H 0.02 0.68 8.04 -51.93 -0.42 0.27 16 12 C -0.60 -16.85 8.37 -34.44 -0.29 -17.14 16 13 H 0.05 1.34 7.58 -52.48 -0.40 0.94 16 14 C 0.02 0.54 5.09 -17.82 -0.09 0.45 16 15 N -0.91 -27.52 13.27 55.43 0.74 -26.78 16 16 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.05 1.07 4.88 -2.18 -0.01 1.06 16 21 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.37 4.00 9.05 45.56 0.41 4.41 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.57 7.98 -51.93 -0.41 0.16 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.63 7.91 -51.93 -0.41 0.22 16 31 H 0.04 1.05 7.92 -51.93 -0.41 0.64 16 32 H 0.07 1.77 7.24 -51.93 -0.38 1.39 16 33 H 0.27 8.21 6.00 -40.82 -0.25 7.96 16 34 H 0.03 0.76 7.53 -51.93 -0.39 0.37 16 35 H 0.06 1.39 7.63 -51.93 -0.40 0.99 16 LS Contribution 278.31 15.07 4.19 4.19 Total: -1.00 -30.79 278.31 -7.62 -38.41 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.14 Total: 1.95 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.65 Total: -18.48 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.49 Total: -37.88 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.45 Total: -8.44 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.79 -7.62 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.086 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds