Wall clock time and date at job start Mon Mar 30 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 H 1.09004 * 109.47208 * 55.00348 * 3 2 1 5 5 O 1.42905 * 109.47403 * 295.00373 * 3 2 1 6 6 C 1.53003 * 109.47266 * 175.00218 * 3 2 1 7 7 N 1.46900 * 109.47110 * 181.83820 * 6 3 2 8 8 C 1.48561 * 110.99921 * 175.66914 * 7 6 3 9 9 C 1.54389 * 104.59320 * 200.95732 * 8 7 6 10 10 C 1.54261 * 105.06038 * 23.85197 * 9 8 7 11 11 H 1.08995 * 110.32331 * 241.00340 * 10 9 8 12 12 C 1.50694 * 110.32369 * 118.89402 * 10 9 8 13 13 H 1.08003 * 120.00260 * 241.45018 * 12 10 9 14 14 C 1.37875 * 120.00228 * 61.45203 * 12 10 9 15 15 N 1.31521 * 119.99870 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00500 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47540 * 270.00473 * 16 14 12 18 18 H 1.48500 * 109.47079 * 150.00280 * 16 14 12 19 19 H 1.48507 * 109.46755 * 30.00555 * 16 14 12 20 20 C 1.48560 * 111.00488 * 60.24698 * 7 6 3 21 21 H 1.09002 * 109.47278 * 59.99312 * 1 2 3 22 22 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46730 * 300.00026 * 1 2 3 24 24 H 1.09003 * 109.46730 * 239.99973 * 2 1 3 25 25 H 1.09002 * 109.47278 * 120.00688 * 2 1 3 26 26 H 0.96704 * 113.99858 * 299.99840 * 5 3 2 27 27 H 1.09001 * 109.47068 * 61.83619 * 6 3 2 28 28 H 1.08996 * 109.46788 * 301.83538 * 6 3 2 29 29 H 1.09001 * 110.41401 * 82.17898 * 8 7 6 30 30 H 1.08999 * 110.50982 * 319.78080 * 8 7 6 31 31 H 1.08999 * 110.32153 * 264.95556 * 9 8 7 32 32 H 1.09000 * 110.31907 * 142.74534 * 9 8 7 33 33 H 0.96995 * 119.99559 * 359.97438 * 15 14 12 34 34 H 1.09003 * 110.40740 * 40.25882 * 20 7 6 35 35 H 1.09002 * 110.40677 * 277.82292 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 3.5649 1.4442 0.1257 7 7 4.0510 2.8298 0.1699 8 6 5.5186 2.8721 0.3961 9 6 5.7866 4.2893 0.9468 10 6 4.4463 4.7398 1.5634 11 1 4.0790 5.6336 1.0591 12 6 4.6105 5.0021 3.0382 13 1 4.0477 4.4233 3.7556 14 6 5.4792 5.9810 3.4718 15 7 6.1642 6.6862 2.5982 16 14 5.6823 6.3067 5.3000 17 1 4.7014 7.3346 5.7317 18 1 7.0596 6.7943 5.5659 19 1 5.4475 5.0501 6.0557 20 6 3.4812 3.5570 1.3334 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.0141 1.6543 -2.0139 27 1 4.0008 0.9335 -0.7330 28 1 3.8546 0.9281 1.0410 29 1 6.0524 2.7217 -0.5423 30 1 5.8145 2.1185 1.1259 31 1 6.0764 4.9609 0.1387 32 1 6.5633 4.2579 1.7110 33 1 6.0585 6.5174 1.6489 34 1 3.4563 2.9105 2.2106 35 1 2.4809 3.9222 1.1006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:38 Heat of formation + Delta-G solvation = -90.391196 kcal Electronic energy + Delta-G solvation = -14778.502644 eV Core-core repulsion = 12388.551400 eV Total energy + Delta-G solvation = -2389.951244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26833 -38.35826 -35.41035 -33.72016 -32.20609 -30.11076 -28.33857 -26.28986 -24.20849 -22.51925 -21.79886 -21.23238 -18.98075 -17.28272 -17.05988 -16.76962 -15.94861 -15.70868 -15.55822 -15.25314 -14.39205 -14.10650 -13.74288 -13.51310 -13.18524 -12.98008 -12.78999 -12.62333 -12.26924 -12.21320 -11.97234 -11.90316 -11.83913 -11.53472 -11.41890 -10.72301 -10.58466 -10.46298 -9.42028 -8.60929 -6.34248 1.51968 1.60643 1.78110 2.56195 3.00116 3.19189 3.62251 3.68717 3.92386 4.10380 4.13184 4.22611 4.25765 4.39732 4.44757 4.58172 4.66236 4.70571 4.80470 4.89738 4.93235 5.04051 5.07275 5.11396 5.28412 5.35511 5.38771 5.59734 5.71301 6.11663 6.15384 6.22039 6.64526 6.96620 7.47140 8.78043 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045928 B = 0.006983 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.503493 B = 4008.776773 C = 4314.436271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.072 0.928 5 O -0.566 6.566 6 C 0.012 3.988 7 N -0.511 5.511 8 C 0.045 3.955 9 C -0.106 4.106 10 C 0.019 3.981 11 H -0.011 1.011 12 C -0.609 4.609 13 H 0.044 0.956 14 C -0.030 4.030 15 N -0.935 5.935 16 Si 1.116 2.884 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.065 3.935 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.384 0.616 27 H 0.097 0.903 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.030 0.970 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.313 -14.402 -5.091 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.053 3.947 4 H 0.090 0.910 5 O -0.373 6.373 6 C -0.117 4.117 7 N -0.234 5.234 8 C -0.083 4.083 9 C -0.144 4.144 10 C 0.000 4.000 11 H 0.007 0.993 12 C -0.647 4.647 13 H 0.062 0.938 14 C -0.229 4.229 15 N -0.572 5.572 16 Si 0.938 3.062 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.063 4.063 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.232 0.768 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.983 -12.843 -4.117 14.754 hybrid contribution -0.181 -1.282 -0.697 1.470 sum -6.165 -14.124 -4.813 16.145 Atomic orbital electron populations 1.21682 0.94913 1.02063 1.01756 1.22147 0.97230 0.95260 1.03776 1.21895 0.91623 0.93650 0.87507 0.90993 1.86582 1.76472 1.58237 1.15978 1.23125 0.97174 0.89434 1.01936 1.65387 1.04648 1.13707 1.39706 1.23033 0.89389 0.96108 0.99755 1.22288 0.98909 0.95639 0.97593 1.19547 0.92276 0.92909 0.95246 0.99270 1.22369 1.27910 1.22289 0.92154 0.93761 1.27231 0.92658 0.92739 1.10229 1.70853 1.41551 1.41239 1.03561 0.82936 0.76867 0.76749 0.69604 1.20073 1.20773 1.19696 1.22840 0.97767 0.95189 0.90513 0.92634 0.91235 0.93735 0.89712 0.90645 0.76759 0.88505 0.94166 0.89184 0.94224 0.94441 0.94045 0.92778 0.95191 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.81 71.98 0.71 -1.97 16 2 C -0.15 -2.69 5.61 30.59 0.17 -2.52 16 3 C 0.11 2.92 2.81 30.59 0.09 3.01 16 4 H 0.07 2.23 6.85 -2.38 -0.02 2.22 16 5 O -0.57 -15.47 12.77 -148.98 -1.90 -17.38 16 6 C 0.01 0.33 4.56 86.30 0.39 0.72 16 7 N -0.51 -19.16 5.34 -881.46 -4.71 -23.87 16 8 C 0.04 1.72 6.49 86.45 0.56 2.28 16 9 C -0.11 -5.11 5.03 31.49 0.16 -4.95 16 10 C 0.02 1.03 2.65 -10.65 -0.03 1.00 16 11 H -0.01 -0.64 8.04 -2.39 -0.02 -0.66 16 12 C -0.61 -35.12 8.37 25.60 0.21 -34.91 16 13 H 0.04 2.52 7.58 -2.91 -0.02 2.50 16 14 C -0.03 -1.74 5.09 84.65 0.43 -1.31 16 15 N -0.94 -57.74 13.27 21.45 0.28 -57.46 16 16 Si 1.12 50.83 29.90 68.60 2.05 52.88 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 C 0.06 2.88 4.88 86.45 0.42 3.30 16 21 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.38 7.32 9.05 -74.05 -0.67 6.65 16 27 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.13 7.98 -2.39 -0.02 1.11 16 29 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.04 1.46 7.91 -2.39 -0.02 1.44 16 31 H 0.04 1.81 7.92 -2.39 -0.02 1.79 16 32 H 0.04 2.19 7.24 -2.39 -0.02 2.17 16 33 H 0.26 16.34 6.00 -92.71 -0.56 15.78 16 34 H 0.03 1.34 7.53 -2.39 -0.02 1.32 16 35 H 0.06 2.61 7.63 -2.39 -0.02 2.60 16 Total: -1.00 -67.03 278.31 -0.57 -67.60 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.59 Total: 13.56 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.12 Total: -35.34 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -4.43 Total: -81.32 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -1.90 Total: -17.38 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -67.03 -0.57 -67.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.790 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds