Wall clock time and date at job start Mon Mar 30 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47517 * 2 1 4 4 H 1.09002 * 109.47026 * 54.99780 * 3 2 1 5 5 O 1.42897 * 109.46931 * 295.00504 * 3 2 1 6 6 C 1.52996 * 109.47498 * 175.00047 * 3 2 1 7 7 N 1.46897 * 109.47044 * 184.99973 * 6 3 2 8 8 C 1.48535 * 111.00063 * 287.39798 * 7 6 3 9 9 C 1.54942 * 103.22593 * 200.27918 * 8 7 6 10 10 C 1.54599 * 102.92043 * 37.41662 * 9 8 7 11 11 H 1.09000 * 110.39177 * 97.00373 * 10 9 8 12 12 C 1.50703 * 110.30641 * 219.12506 * 10 9 8 13 13 H 1.07994 * 119.99603 * 115.71512 * 12 10 9 14 14 C 1.37875 * 119.99838 * 295.71656 * 12 10 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.47907 * 110.99848 * 170.00319 * 7 6 3 21 21 H 1.09002 * 109.47579 * 59.99652 * 1 2 3 22 22 H 1.09002 * 109.47614 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46874 * 299.99912 * 1 2 3 24 24 H 1.09007 * 109.47368 * 240.00226 * 2 1 3 25 25 H 1.09002 * 109.47579 * 120.00348 * 2 1 3 26 26 H 0.96705 * 114.00416 * 299.99415 * 5 3 2 27 27 H 1.09003 * 109.46720 * 65.00331 * 6 3 2 28 28 H 1.08992 * 109.47010 * 305.00352 * 6 3 2 29 29 H 1.09004 * 110.66774 * 318.71393 * 8 7 6 30 30 H 1.08997 * 110.66798 * 81.68011 * 8 7 6 31 31 H 1.08997 * 110.72463 * 279.05238 * 9 8 7 32 32 H 1.09007 * 110.72230 * 155.76864 * 9 8 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.08999 * 109.91413 * 26.49223 * 20 7 6 35 35 H 1.08998 * 109.91352 * 265.20078 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4443 0.1257 7 7 4.0445 2.8275 0.2461 8 6 3.9364 3.5432 -1.0510 9 6 4.9276 4.7230 -0.8885 10 6 6.0910 4.0898 -0.0913 11 1 6.8902 3.7821 -0.7656 12 6 6.6164 5.0648 0.9306 13 1 6.5285 4.8427 1.9838 14 6 7.2091 6.2403 0.5210 15 7 7.3164 6.5105 -0.7616 16 14 7.8609 7.4486 1.7877 17 1 7.6202 6.9135 3.1519 18 1 7.1616 8.7499 1.6363 19 1 9.3187 7.6432 1.5820 20 6 5.4784 2.8617 0.6071 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.0140 1.6543 -2.0139 27 1 4.0028 0.9836 -0.7597 28 1 3.8570 0.8800 1.0112 29 1 4.2400 2.8962 -1.8739 30 1 2.9212 3.9089 -1.2051 31 1 4.4706 5.5358 -0.3242 32 1 5.2725 5.0737 -1.8613 33 1 6.9783 5.8829 -1.4194 34 1 5.9705 1.9532 0.2599 35 1 5.5871 2.9562 1.6875 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:46 Heat of formation + Delta-G solvation = -66.987009 kcal Electronic energy + Delta-G solvation = -14759.733876 eV Core-core repulsion = 12370.797513 eV Total energy + Delta-G solvation = -2388.936362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84255 -36.96467 -33.37487 -32.83759 -30.54209 -28.16863 -27.18405 -24.01446 -22.87354 -21.31572 -20.23288 -19.56778 -16.85995 -16.33472 -15.91390 -15.12581 -14.74054 -14.06204 -13.71010 -13.54262 -12.98541 -12.64829 -12.18330 -12.07836 -11.98480 -11.49229 -11.16640 -11.08635 -10.84658 -10.73132 -10.58965 -10.40911 -10.07200 -9.86701 -9.58212 -9.41862 -8.40036 -8.28599 -7.76120 -6.27651 -3.98371 3.47877 3.51733 3.65354 4.31440 4.55406 4.58606 4.94259 5.03844 5.07374 5.34132 5.44969 5.48736 5.65753 5.72446 5.78402 5.82421 5.86072 6.02881 6.13040 6.14682 6.23369 6.30563 6.57934 6.74934 6.92953 7.10714 7.31391 7.38891 7.70395 7.77434 7.84727 8.30726 8.50988 8.95470 9.72681 11.10745 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.067890 B = 0.006296 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.333821 B = 4446.094063 C = 4577.922082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C 0.112 3.888 4 H 0.104 0.896 5 O -0.554 6.554 6 C 0.015 3.985 7 N -0.511 5.511 8 C 0.039 3.961 9 C -0.112 4.112 10 C 0.024 3.976 11 H 0.018 0.982 12 C -0.586 4.586 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 1.073 2.927 17 H -0.290 1.290 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.050 3.950 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.366 0.634 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.271 0.729 34 H 0.017 0.983 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -11.563 -0.082 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.193 4.193 3 C 0.053 3.947 4 H 0.122 0.878 5 O -0.358 6.358 6 C -0.114 4.114 7 N -0.235 5.235 8 C -0.088 4.088 9 C -0.151 4.151 10 C 0.005 3.995 11 H 0.036 0.964 12 C -0.624 4.624 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.553 5.553 16 Si 0.902 3.098 17 H -0.216 1.216 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.077 4.077 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.212 0.788 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.545 -9.459 0.923 13.469 hybrid contribution 0.119 -2.458 -1.137 2.710 sum -9.426 -11.916 -0.213 15.195 Atomic orbital electron populations 1.21682 0.95184 1.01057 1.02469 1.22220 0.97040 0.97650 1.02416 1.21992 0.92988 0.91798 0.87928 0.87778 1.86635 1.76780 1.57035 1.15391 1.22969 0.95964 0.92051 1.00461 1.64712 1.18792 1.11352 1.28629 1.23351 1.00662 0.95922 0.88866 1.22718 0.96360 0.96642 0.99399 1.19649 0.92717 0.92200 0.94936 0.96379 1.22050 1.41769 1.05525 0.93084 0.93120 1.25780 0.95043 0.98098 0.99731 1.70732 1.44721 1.38995 1.00827 0.83488 0.76391 0.75580 0.74346 1.21577 1.21418 1.21516 1.22977 0.86019 0.97576 1.01106 0.92121 0.93168 0.92697 0.92025 0.91194 0.78773 0.95289 0.90758 0.95926 0.89965 0.91464 0.93142 0.91768 0.96471 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 37.15 0.36 -1.03 16 2 C -0.15 -1.56 5.61 -26.73 -0.15 -1.71 16 3 C 0.11 1.47 3.18 -26.73 -0.09 1.38 16 4 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 5 O -0.55 -7.56 10.24 -35.23 -0.36 -7.92 16 6 C 0.01 0.23 4.52 -3.83 -0.02 0.21 16 7 N -0.51 -10.04 5.24 -230.45 -1.21 -11.25 16 8 C 0.04 0.78 5.33 -1.89 -0.01 0.77 16 9 C -0.11 -2.69 5.57 -24.87 -0.14 -2.83 16 10 C 0.02 0.62 2.54 -90.41 -0.23 0.39 16 11 H 0.02 0.50 7.95 -51.93 -0.41 0.08 16 12 C -0.59 -16.73 8.38 -34.44 -0.29 -17.02 16 13 H 0.05 1.45 7.34 -52.49 -0.39 1.07 16 14 C 0.02 0.50 5.34 -17.82 -0.10 0.40 16 15 N -0.92 -27.81 13.45 55.43 0.75 -27.06 16 16 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.05 1.11 6.31 -2.75 -0.02 1.09 16 21 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.37 3.91 9.05 45.56 0.41 4.32 16 27 H 0.03 0.43 7.83 -51.93 -0.41 0.02 16 28 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 29 H 0.02 0.42 7.81 -51.93 -0.41 0.01 16 30 H 0.08 1.59 6.79 -51.93 -0.35 1.24 16 31 H 0.07 1.76 7.86 -51.93 -0.41 1.35 16 32 H 0.05 1.22 7.10 -51.93 -0.37 0.85 16 33 H 0.27 8.13 5.65 -40.82 -0.23 7.90 16 34 H 0.02 0.35 7.77 -51.93 -0.40 -0.06 16 35 H 0.07 1.64 7.39 -51.93 -0.38 1.26 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -30.84 275.89 -7.50 -38.33 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.08 Total: 1.46 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.67 Total: -18.34 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.46 Total: -38.31 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.36 Total: -7.92 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.84 -7.50 -38.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.655 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds