Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47517 * 2 1 4 4 H 1.09002 * 109.47026 * 54.99780 * 3 2 1 5 5 O 1.42897 * 109.46931 * 295.00504 * 3 2 1 6 6 C 1.52996 * 109.47498 * 175.00047 * 3 2 1 7 7 N 1.46897 * 109.47044 * 184.99973 * 6 3 2 8 8 C 1.48535 * 111.00063 * 287.39798 * 7 6 3 9 9 C 1.54942 * 103.22593 * 200.27918 * 8 7 6 10 10 C 1.54599 * 102.92043 * 37.41662 * 9 8 7 11 11 H 1.09000 * 110.39177 * 97.00373 * 10 9 8 12 12 C 1.50703 * 110.30641 * 219.12506 * 10 9 8 13 13 H 1.07994 * 119.99603 * 115.71512 * 12 10 9 14 14 C 1.37875 * 119.99838 * 295.71656 * 12 10 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.47907 * 110.99848 * 170.00319 * 7 6 3 21 21 H 1.09002 * 109.47579 * 59.99652 * 1 2 3 22 22 H 1.09002 * 109.47614 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46874 * 299.99912 * 1 2 3 24 24 H 1.09007 * 109.47368 * 240.00226 * 2 1 3 25 25 H 1.09002 * 109.47579 * 120.00348 * 2 1 3 26 26 H 0.96705 * 114.00416 * 299.99415 * 5 3 2 27 27 H 1.09003 * 109.46720 * 65.00331 * 6 3 2 28 28 H 1.08992 * 109.47010 * 305.00352 * 6 3 2 29 29 H 1.09004 * 110.66774 * 318.71393 * 8 7 6 30 30 H 1.08997 * 110.66798 * 81.68011 * 8 7 6 31 31 H 1.08997 * 110.72463 * 279.05238 * 9 8 7 32 32 H 1.09007 * 110.72230 * 155.76864 * 9 8 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.08999 * 109.91413 * 26.49223 * 20 7 6 35 35 H 1.08998 * 109.91352 * 265.20078 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4443 0.1257 7 7 4.0445 2.8275 0.2461 8 6 3.9364 3.5432 -1.0510 9 6 4.9276 4.7230 -0.8885 10 6 6.0910 4.0898 -0.0913 11 1 6.8902 3.7821 -0.7656 12 6 6.6164 5.0648 0.9306 13 1 6.5285 4.8427 1.9838 14 6 7.2091 6.2403 0.5210 15 7 7.3164 6.5105 -0.7616 16 14 7.8609 7.4486 1.7877 17 1 7.6202 6.9135 3.1519 18 1 7.1616 8.7499 1.6363 19 1 9.3187 7.6432 1.5820 20 6 5.4784 2.8617 0.6071 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.0140 1.6543 -2.0139 27 1 4.0028 0.9836 -0.7597 28 1 3.8570 0.8800 1.0112 29 1 4.2400 2.8962 -1.8739 30 1 2.9212 3.9089 -1.2051 31 1 4.4706 5.5358 -0.3242 32 1 5.2725 5.0737 -1.8613 33 1 6.9783 5.8829 -1.4194 34 1 5.9705 1.9532 0.2599 35 1 5.5871 2.9562 1.6875 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = -89.385411 kcal Electronic energy + Delta-G solvation = -14760.705143 eV Core-core repulsion = 12370.797513 eV Total energy + Delta-G solvation = -2389.907630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27935 -38.32094 -35.31550 -33.77671 -32.20527 -30.00872 -28.52634 -26.04568 -24.10568 -22.30086 -21.84732 -21.49907 -18.98151 -17.49844 -17.06076 -16.59437 -16.13786 -15.68424 -15.29067 -14.81381 -14.57936 -14.16948 -13.78184 -13.30723 -13.19715 -12.88565 -12.85193 -12.61708 -12.43980 -12.09147 -11.92217 -11.82693 -11.73447 -11.65681 -11.50410 -10.68344 -10.53212 -10.45252 -9.30405 -8.58286 -6.29848 1.52980 1.62178 1.78655 2.58095 3.01938 3.21855 3.52603 3.84651 3.98971 4.06936 4.18276 4.24824 4.30481 4.39286 4.42297 4.63022 4.68444 4.80345 4.85740 4.90746 4.95161 5.02347 5.10803 5.23502 5.33427 5.37721 5.41753 5.47094 6.02111 6.12091 6.20956 6.26599 6.68044 6.86987 7.49153 8.80750 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.067890 B = 0.006296 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.333821 B = 4446.094063 C = 4577.922082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C 0.119 3.881 4 H 0.087 0.913 5 O -0.569 6.569 6 C 0.014 3.986 7 N -0.524 5.524 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.012 3.988 11 H -0.005 1.005 12 C -0.601 4.601 13 H 0.043 0.957 14 C -0.032 4.032 15 N -0.939 5.939 16 Si 1.118 2.882 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.061 3.939 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.380 0.620 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -12.915 0.294 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C 0.059 3.941 4 H 0.105 0.895 5 O -0.376 6.376 6 C -0.114 4.114 7 N -0.248 5.248 8 C -0.070 4.070 9 C -0.146 4.146 10 C -0.007 4.007 11 H 0.013 0.987 12 C -0.639 4.639 13 H 0.062 0.938 14 C -0.230 4.230 15 N -0.577 5.577 16 Si 0.941 3.059 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.067 4.067 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.228 0.772 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.349 -10.845 1.289 15.046 hybrid contribution 0.348 -2.081 -1.278 2.466 sum -10.002 -12.926 0.011 16.343 Atomic orbital electron populations 1.21669 0.94776 1.01933 1.01896 1.22133 0.97266 0.95429 1.03565 1.21895 0.91272 0.93539 0.87367 0.89466 1.86600 1.76981 1.57871 1.16161 1.23123 0.97367 0.89349 1.01600 1.64660 1.16988 1.14553 1.28584 1.23175 0.99649 0.94409 0.89726 1.22511 0.96783 0.97355 0.97944 1.19674 0.92815 0.93610 0.94563 0.98700 1.22400 1.41750 1.06351 0.93394 0.93823 1.27197 0.95003 1.00123 1.00676 1.70845 1.46161 1.39175 1.01512 0.82906 0.76366 0.73816 0.72821 1.19888 1.20722 1.20444 1.22721 0.87623 0.96383 0.99925 0.92826 0.91563 0.93190 0.90664 0.90232 0.77177 0.93988 0.89652 0.94019 0.89143 0.94492 0.94219 0.92864 0.94798 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.81 71.98 0.71 -1.68 16 2 C -0.15 -2.47 5.61 30.59 0.17 -2.30 16 3 C 0.12 2.81 3.18 30.59 0.10 2.90 16 4 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 5 O -0.57 -14.17 10.24 -148.98 -1.53 -15.70 16 6 C 0.01 0.39 4.52 86.30 0.39 0.78 16 7 N -0.52 -19.82 5.24 -883.02 -4.63 -24.45 16 8 C 0.06 2.22 5.33 86.65 0.46 2.68 16 9 C -0.11 -5.22 5.57 31.80 0.18 -5.05 16 10 C 0.01 0.65 2.54 -10.66 -0.03 0.62 16 11 H -0.01 -0.29 7.95 -2.39 -0.02 -0.30 16 12 C -0.60 -34.89 8.38 25.60 0.21 -34.68 16 13 H 0.04 2.53 7.34 -2.91 -0.02 2.51 16 14 C -0.03 -1.87 5.34 84.65 0.45 -1.42 16 15 N -0.94 -58.12 13.45 21.45 0.29 -57.84 16 16 Si 1.12 51.74 29.90 68.60 2.05 53.79 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.06 2.65 6.31 86.44 0.55 3.20 16 21 H 0.05 0.95 7.82 -2.39 -0.02 0.94 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.38 6.98 9.05 -74.05 -0.67 6.31 16 27 H 0.04 1.08 7.83 -2.39 -0.02 1.06 16 28 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 29 H 0.04 1.45 7.81 -2.38 -0.02 1.43 16 30 H 0.09 3.36 6.79 -2.39 -0.02 3.35 16 31 H 0.04 1.98 7.86 -2.39 -0.02 1.96 16 32 H 0.04 1.97 7.10 -2.38 -0.02 1.95 16 33 H 0.26 16.17 5.65 -92.71 -0.52 15.65 16 34 H 0.03 1.33 7.77 -2.39 -0.02 1.32 16 35 H 0.06 2.72 7.39 -2.39 -0.02 2.70 16 Total: -1.00 -66.51 275.89 0.00 -66.51 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.63 Total: 12.62 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.19 Total: -34.93 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -4.34 Total: -82.29 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.53 Total: -15.70 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -66.51 0.00 -66.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.876 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds