Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47491 * 2 1 4 4 C 1.53089 * 109.47962 * 120.02447 * 2 1 3 5 5 C 1.53177 * 109.16089 * 177.58040 * 4 2 1 6 6 C 1.53176 * 109.04946 * 303.03717 * 5 4 2 7 7 C 1.53095 * 109.16144 * 56.97326 * 6 5 4 8 8 H 1.08999 * 109.48817 * 62.37847 * 7 6 5 9 9 C 1.52994 * 109.48372 * 182.40864 * 7 6 5 10 10 N 1.46897 * 109.47612 * 184.94080 * 9 7 6 11 11 C 1.46893 * 111.00229 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47427 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99778 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00459 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00222 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99861 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46796 * 89.99870 * 16 14 12 18 18 H 1.48491 * 109.47314 * 209.99907 * 16 14 12 19 19 H 1.48506 * 109.47084 * 330.00285 * 16 14 12 20 20 O 1.42901 * 109.41489 * 302.39344 * 7 6 5 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99877 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99705 * 1 2 3 24 24 H 1.09000 * 109.52420 * 297.49795 * 4 2 1 25 25 H 1.09000 * 109.52332 * 57.69222 * 4 2 1 26 26 H 1.09006 * 109.54464 * 183.16309 * 5 4 2 27 27 H 1.09003 * 109.60770 * 62.95056 * 5 4 2 28 28 H 1.08993 * 109.52124 * 297.07147 * 6 5 4 29 29 H 1.08995 * 109.57709 * 176.90964 * 6 5 4 30 30 H 1.08998 * 109.47273 * 304.94607 * 9 7 6 31 31 H 1.09006 * 109.47236 * 64.94222 * 9 7 6 32 32 H 1.00905 * 110.99280 * 56.04943 * 10 9 7 33 33 H 1.08999 * 109.47711 * 300.00491 * 11 10 9 34 34 H 1.08997 * 109.47330 * 60.00561 * 11 10 9 35 35 H 0.96998 * 120.00090 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7710 1.2120 6 6 4.0177 -1.4600 -0.0811 7 6 3.4308 -0.7091 -1.2792 8 1 3.8192 0.3092 -1.2959 9 6 3.8228 -1.4260 -2.5726 10 7 3.3610 -0.6425 -3.7262 11 6 3.7211 -1.3017 -4.9885 12 6 3.2326 -0.4703 -6.1467 13 1 2.7075 0.4555 -5.9633 14 6 3.4561 -0.8915 -7.4404 15 7 3.0302 -0.1657 -8.4511 16 14 4.3637 -2.4930 -7.7577 17 1 3.3874 -3.6099 -7.8264 18 1 5.0993 -2.3987 -9.0441 19 1 5.3258 -2.7437 -6.6545 20 8 2.0067 -0.6740 -1.1665 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.7149 -0.1842 2.1399 25 1 1.6444 -1.7374 1.2710 26 1 3.9392 -1.3329 2.0705 27 1 3.9703 0.2429 1.2416 28 1 3.6614 -2.4900 -0.0867 29 1 5.1059 -1.4506 -0.1429 30 1 4.9068 -1.5314 -2.6155 31 1 3.3607 -2.4130 -2.5954 32 1 3.7246 0.2981 -3.6932 33 1 4.8045 -1.4059 -5.0480 34 1 3.2587 -2.2879 -5.0283 35 1 3.1871 -0.4622 -9.3612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594732840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -64.267817 kcal Electronic energy + Delta-G solvation = -14464.376002 eV Core-core repulsion = 12075.557552 eV Total energy + Delta-G solvation = -2388.818449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41690 -35.54335 -33.51127 -33.02225 -31.92225 -28.89203 -26.98851 -24.78290 -22.45907 -21.33628 -21.06674 -20.14170 -16.81757 -16.43795 -15.72937 -14.75281 -14.69073 -14.28912 -14.00657 -13.86458 -13.23629 -12.70642 -12.38781 -12.28737 -12.27824 -11.94651 -11.66093 -11.48174 -11.04956 -11.02229 -10.75440 -10.57989 -10.46596 -10.04184 -9.74727 -9.24833 -9.13165 -8.54566 -7.35578 -6.01454 -3.98883 3.32164 3.38665 3.41203 3.89137 4.45871 4.65568 4.70646 4.84002 4.92269 5.21348 5.27338 5.31313 5.39308 5.47593 5.60573 5.61203 5.68843 5.75606 5.83447 5.88497 5.97545 6.05124 6.11229 6.21597 6.26374 6.41102 6.82292 7.06662 7.57438 7.67266 7.95887 8.40933 8.71089 9.07443 9.60693 11.12011 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048840 B = 0.006156 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.165493 B = 4547.364254 C = 4916.401268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.052 0.948 4 C -0.150 4.150 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.098 3.902 8 H 0.053 0.947 9 C 0.064 3.936 10 N -0.672 5.672 11 C 0.164 3.836 12 C -0.514 4.514 13 H 0.079 0.921 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 O -0.353 6.353 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.333 0.667 33 H -0.018 1.018 34 H 0.022 0.978 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -1.599 19.675 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.070 0.930 4 C -0.188 4.188 5 C -0.158 4.158 6 C -0.190 4.190 7 C 0.039 3.961 8 H 0.071 0.929 9 C -0.066 4.066 10 N -0.302 5.302 11 C 0.036 3.964 12 C -0.552 4.552 13 H 0.097 0.903 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.706 3.294 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 O -0.272 6.272 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.000 1.000 34 H 0.040 0.960 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.061 -1.951 19.334 19.432 hybrid contribution 1.636 -0.595 -0.112 1.744 sum 1.697 -2.545 19.222 19.464 Atomic orbital electron populations 1.21731 0.93358 1.02771 1.02191 1.22032 0.95041 0.94978 0.85488 0.92958 1.22242 0.96013 1.01924 0.98608 1.21575 0.95773 1.00809 0.97673 1.22209 1.00925 1.00729 0.95093 1.22100 0.81799 0.98092 0.94092 0.92929 1.21949 0.96505 0.98365 0.89799 1.60389 1.63590 1.04849 1.01393 1.20004 0.93145 0.95606 0.87642 1.21081 1.36601 1.08721 0.88793 0.90271 1.24907 0.95468 0.96950 0.96065 1.69901 1.46954 1.38475 0.98752 0.86814 0.80453 0.84517 0.77665 1.20129 1.21245 1.19320 1.88123 1.20209 1.77252 1.41588 0.91992 0.91700 0.91488 0.91392 0.91181 0.91794 0.92011 0.91030 0.91121 0.95002 0.90958 0.84997 1.00023 0.95988 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.57 37.16 0.36 -1.28 16 2 C 0.08 1.05 3.26 -26.68 -0.09 0.97 16 3 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.15 -1.56 5.42 -26.59 -0.14 -1.71 16 5 C -0.12 -1.22 6.03 -26.55 -0.16 -1.38 16 6 C -0.15 -1.79 5.42 -26.59 -0.14 -1.93 16 7 C 0.10 1.47 2.82 -26.68 -0.08 1.39 16 8 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.06 1.13 5.35 -3.83 -0.02 1.11 16 10 N -0.67 -14.81 6.44 -115.07 -0.74 -15.55 16 11 C 0.16 4.16 4.51 -4.98 -0.02 4.14 16 12 C -0.51 -15.23 9.87 -34.44 -0.34 -15.57 16 13 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 16 Si 0.88 22.09 27.47 -169.99 -4.67 17.43 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 20 O -0.35 -5.87 9.99 -35.23 -0.35 -6.22 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.33 7.05 8.72 -39.29 -0.34 6.71 16 33 H -0.02 -0.45 7.20 -51.93 -0.37 -0.82 16 34 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 282.03 15.07 4.25 4.25 Total: -1.00 -32.01 282.03 -7.67 -39.68 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.20 Total: 0.30 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.74 Total: -12.34 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.03 Total: -43.10 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.35 Total: -6.22 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.01 -7.67 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.586 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds