Wall clock time and date at job start Mon Mar 30 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47491 * 2 1 4 4 C 1.53089 * 109.47962 * 120.02447 * 2 1 3 5 5 C 1.53177 * 109.16089 * 177.58040 * 4 2 1 6 6 C 1.53176 * 109.04946 * 303.03717 * 5 4 2 7 7 C 1.53095 * 109.16144 * 56.97326 * 6 5 4 8 8 H 1.08999 * 109.48817 * 62.37847 * 7 6 5 9 9 C 1.52994 * 109.48372 * 182.40864 * 7 6 5 10 10 N 1.46897 * 109.47612 * 184.94080 * 9 7 6 11 11 C 1.46893 * 111.00229 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47427 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99778 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00459 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00222 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99861 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46796 * 89.99870 * 16 14 12 18 18 H 1.48491 * 109.47314 * 209.99907 * 16 14 12 19 19 H 1.48506 * 109.47084 * 330.00285 * 16 14 12 20 20 O 1.42901 * 109.41489 * 302.39344 * 7 6 5 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99877 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99705 * 1 2 3 24 24 H 1.09000 * 109.52420 * 297.49795 * 4 2 1 25 25 H 1.09000 * 109.52332 * 57.69222 * 4 2 1 26 26 H 1.09006 * 109.54464 * 183.16309 * 5 4 2 27 27 H 1.09003 * 109.60770 * 62.95056 * 5 4 2 28 28 H 1.08993 * 109.52124 * 297.07147 * 6 5 4 29 29 H 1.08995 * 109.57709 * 176.90964 * 6 5 4 30 30 H 1.08998 * 109.47273 * 304.94607 * 9 7 6 31 31 H 1.09006 * 109.47236 * 64.94222 * 9 7 6 32 32 H 1.00905 * 110.99280 * 56.04943 * 10 9 7 33 33 H 1.08999 * 109.47711 * 300.00491 * 11 10 9 34 34 H 1.08997 * 109.47330 * 60.00561 * 11 10 9 35 35 H 0.96998 * 120.00090 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7710 1.2120 6 6 4.0177 -1.4600 -0.0811 7 6 3.4308 -0.7091 -1.2792 8 1 3.8192 0.3092 -1.2959 9 6 3.8228 -1.4260 -2.5726 10 7 3.3610 -0.6425 -3.7262 11 6 3.7211 -1.3017 -4.9885 12 6 3.2326 -0.4703 -6.1467 13 1 2.7075 0.4555 -5.9633 14 6 3.4561 -0.8915 -7.4404 15 7 3.0302 -0.1657 -8.4511 16 14 4.3637 -2.4930 -7.7577 17 1 3.3874 -3.6099 -7.8264 18 1 5.0993 -2.3987 -9.0441 19 1 5.3258 -2.7437 -6.6545 20 8 2.0067 -0.6740 -1.1665 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.7149 -0.1842 2.1399 25 1 1.6444 -1.7374 1.2710 26 1 3.9392 -1.3329 2.0705 27 1 3.9703 0.2429 1.2416 28 1 3.6614 -2.4900 -0.0867 29 1 5.1059 -1.4506 -0.1429 30 1 4.9068 -1.5314 -2.6155 31 1 3.3607 -2.4130 -2.5954 32 1 3.7246 0.2981 -3.6932 33 1 4.8045 -1.4059 -5.0480 34 1 3.2587 -2.2879 -5.0283 35 1 3.1871 -0.4622 -9.3612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594732840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:06 Heat of formation + Delta-G solvation = -87.299464 kcal Electronic energy + Delta-G solvation = -14465.374729 eV Core-core repulsion = 12075.557552 eV Total energy + Delta-G solvation = -2389.817177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47905 -37.19942 -34.81328 -34.47279 -33.52797 -30.41480 -28.44844 -26.12244 -23.62574 -22.97066 -22.53020 -21.11569 -18.99206 -17.69450 -16.89554 -16.38368 -15.92430 -15.59016 -15.44834 -15.27220 -14.76485 -14.25907 -13.73983 -13.63568 -13.39656 -13.20198 -12.99967 -12.81280 -12.48460 -12.43443 -11.95480 -11.86759 -11.84473 -11.60749 -11.45309 -11.08057 -10.82162 -10.19550 -9.10189 -8.31203 -6.36184 1.34208 1.36313 1.47343 2.33496 2.82896 3.02513 3.39674 3.83842 3.93507 3.98734 4.09283 4.24454 4.32031 4.42074 4.54173 4.55388 4.73800 4.75757 4.80978 4.87228 4.98497 5.02080 5.05141 5.11268 5.17984 5.20038 5.34175 5.44165 5.50529 5.93709 6.50265 6.55132 6.66377 6.76655 7.28820 8.85835 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048840 B = 0.006156 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.165493 B = 4547.364254 C = 4916.401268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.053 0.947 4 C -0.144 4.144 5 C -0.119 4.119 6 C -0.145 4.145 7 C 0.098 3.902 8 H 0.053 0.947 9 C 0.063 3.937 10 N -0.687 5.687 11 C 0.176 3.824 12 C -0.531 4.531 13 H 0.034 0.966 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.249 1.249 20 O -0.389 6.389 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.334 0.666 33 H -0.010 1.010 34 H 0.021 0.979 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -3.003 21.683 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.071 0.929 4 C -0.182 4.182 5 C -0.156 4.156 6 C -0.184 4.184 7 C 0.040 3.960 8 H 0.071 0.929 9 C -0.066 4.066 10 N -0.318 5.318 11 C 0.047 3.953 12 C -0.569 4.569 13 H 0.053 0.947 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.173 1.173 20 O -0.309 6.309 21 H 0.076 0.924 22 H 0.112 0.888 23 H 0.066 0.934 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.008 0.992 34 H 0.039 0.961 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.312 -3.346 21.377 21.677 hybrid contribution 1.160 -0.049 -0.717 1.365 sum 2.472 -3.395 20.659 21.082 Atomic orbital electron populations 1.21762 0.92784 1.02643 1.02699 1.22299 0.95639 0.95074 0.85494 0.92929 1.22199 0.96333 1.01632 0.98037 1.21598 0.95409 1.01314 0.97287 1.22161 1.01621 1.00144 0.94438 1.22081 0.81635 0.98238 0.94012 0.92926 1.22055 0.97484 0.97686 0.89384 1.60281 1.64534 1.05354 1.01609 1.19747 0.93128 0.94714 0.87711 1.21349 1.36602 1.07973 0.90995 0.94749 1.25918 0.96326 1.01263 0.95527 1.70055 1.48442 1.40850 0.99483 0.85608 0.79379 0.78990 0.78280 1.19155 1.20302 1.17305 1.88067 1.21054 1.77997 1.43825 0.92402 0.88759 0.93408 0.89012 0.91572 0.89650 0.91395 0.91351 0.89597 0.93161 0.91686 0.84837 0.99224 0.96114 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.57 71.98 0.69 -2.43 16 2 C 0.07 1.76 3.26 30.63 0.10 1.86 16 3 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 4 C -0.14 -2.62 5.42 30.68 0.17 -2.45 16 5 C -0.12 -2.01 6.03 30.71 0.19 -1.82 16 6 C -0.15 -3.08 5.42 30.69 0.17 -2.91 16 7 C 0.10 2.84 2.82 30.62 0.09 2.93 16 8 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 9 C 0.06 2.18 5.35 86.30 0.46 2.64 16 10 N -0.69 -30.44 6.44 -517.96 -3.34 -33.78 16 11 C 0.18 8.86 4.51 85.56 0.39 9.25 16 12 C -0.53 -32.29 9.87 25.60 0.25 -32.04 16 13 H 0.03 2.32 8.06 -2.91 -0.02 2.30 16 14 C 0.01 0.43 5.47 84.66 0.46 0.89 16 15 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 16 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.25 -10.97 6.54 99.48 0.65 -10.31 16 20 O -0.39 -12.82 9.99 -148.98 -1.49 -14.31 16 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.33 14.42 8.72 -89.69 -0.78 13.64 16 33 H -0.01 -0.48 7.20 -2.39 -0.02 -0.49 16 34 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -70.15 282.03 0.52 -69.64 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.20 Total: 15.98 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 2.96 Total: -24.09 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.04 Total: -94.30 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.49 Total: -14.31 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -70.15 0.52 -69.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.664 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds