Wall clock time and date at job start Mon Mar 30 2020 04:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49074 * 2 1 4 4 C 1.53089 * 109.48171 * 120.03407 * 2 1 3 5 5 C 1.53173 * 109.16435 * 62.36976 * 4 2 1 6 6 C 1.53173 * 109.04528 * 56.97782 * 5 4 2 7 7 C 1.53090 * 109.16469 * 303.03672 * 6 5 4 8 8 H 1.09006 * 109.47717 * 297.60360 * 7 6 5 9 9 C 1.52995 * 109.48552 * 177.58210 * 7 6 5 10 10 N 1.46898 * 109.47458 * 180.02562 * 9 7 6 11 11 C 1.46900 * 110.99926 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46724 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 O 1.42900 * 109.42596 * 57.58735 * 7 6 5 21 21 H 1.09003 * 109.47447 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47187 * 300.02761 * 1 2 3 23 23 H 1.09005 * 109.47484 * 60.02751 * 1 2 3 24 24 H 1.08997 * 109.52581 * 182.28109 * 4 2 1 25 25 H 1.09005 * 109.52057 * 302.40352 * 4 2 1 26 26 H 1.09004 * 109.54135 * 176.85046 * 5 4 2 27 27 H 1.08998 * 109.54764 * 297.02335 * 5 4 2 28 28 H 1.09005 * 109.53284 * 183.12482 * 6 5 4 29 29 H 1.09004 * 109.51634 * 62.93768 * 6 5 4 30 30 H 1.08999 * 109.47367 * 60.01406 * 9 7 6 31 31 H 1.09004 * 109.47208 * 300.02410 * 9 7 6 32 32 H 1.00903 * 110.99717 * 303.94938 * 10 9 7 33 33 H 1.09004 * 109.47135 * 60.00123 * 11 10 9 34 34 H 1.08997 * 109.47656 * 299.99737 * 11 10 9 35 35 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 1.5756 -2.1814 1.2120 6 6 2.0761 -2.8324 -0.0810 7 6 1.5645 -2.0284 -1.2792 8 1 0.4749 -2.0549 -1.2961 9 6 2.1097 -2.6372 -2.5726 10 7 1.6191 -1.8652 -3.7220 11 6 2.1242 -2.4218 -4.9842 12 6 1.6006 -1.6061 -6.1380 13 1 0.9574 -0.7586 -5.9524 14 6 1.9428 -1.9416 -7.4309 15 7 1.4862 -1.2294 -8.4379 16 14 3.0547 -3.4078 -7.7522 17 1 2.2272 -4.6297 -7.9180 18 1 3.9798 -3.5884 -6.6046 19 1 3.8412 -3.1709 -8.9894 20 8 2.0065 -0.6742 -1.1665 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5143 0.8898 23 1 -0.3634 0.5134 -0.8903 24 1 3.1297 -0.6875 1.2709 25 1 1.6430 -0.2352 2.1398 26 1 1.9825 -2.7158 2.0705 27 1 0.4867 -2.2181 1.2423 28 1 1.7031 -3.8548 -0.1424 29 1 3.1661 -2.8404 -0.0865 30 1 1.7729 -3.6703 -2.6582 31 1 3.1993 -2.6107 -2.5555 32 1 0.6111 -1.8206 -3.7239 33 1 1.7876 -3.4535 -5.0868 34 1 3.2138 -2.3935 -4.9836 35 1 1.7266 -1.4657 -9.3474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594732842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:08 Heat of formation + Delta-G solvation = -83.582094 kcal Electronic energy + Delta-G solvation = -14608.638396 eV Core-core repulsion = 12218.982417 eV Total energy + Delta-G solvation = -2389.655979 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72402 -37.18039 -34.75398 -34.47669 -33.17567 -30.28892 -28.62294 -26.20750 -24.04289 -23.11944 -22.68516 -20.14268 -18.99392 -17.43832 -17.19954 -16.40240 -16.01296 -15.64819 -15.57193 -15.14192 -14.66173 -14.28314 -13.88828 -13.61018 -13.42165 -13.37501 -12.84605 -12.77503 -12.57350 -12.36273 -12.01724 -11.81672 -11.80202 -11.58674 -11.39023 -10.87220 -10.82215 -10.16753 -9.09296 -8.30874 -6.35696 1.33456 1.36704 1.48257 2.33863 2.92129 3.02753 3.41833 3.86367 3.95209 3.99437 4.09998 4.23694 4.36943 4.43148 4.48069 4.56422 4.70986 4.74098 4.81365 4.87310 4.99620 5.04197 5.06009 5.13083 5.16161 5.23255 5.33683 5.51490 5.52271 5.94430 6.51116 6.56508 6.67520 6.77925 7.29292 8.86200 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055055 B = 0.006242 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.459709 B = 4484.996914 C = 4813.448861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.097 0.903 4 C -0.144 4.144 5 C -0.118 4.118 6 C -0.146 4.146 7 C 0.095 3.905 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.685 5.685 11 C 0.175 3.825 12 C -0.530 4.530 13 H 0.034 0.966 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.955 3.045 17 H -0.263 1.263 18 H -0.252 1.252 19 H -0.279 1.279 20 O -0.386 6.386 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.334 0.666 33 H -0.012 1.012 34 H 0.022 0.978 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 -4.284 21.554 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.115 0.885 4 C -0.182 4.182 5 C -0.156 4.156 6 C -0.184 4.184 7 C 0.037 3.963 8 H 0.077 0.923 9 C -0.067 4.067 10 N -0.315 5.315 11 C 0.047 3.953 12 C -0.568 4.568 13 H 0.052 0.948 14 C -0.191 4.191 15 N -0.589 5.589 16 Si 0.778 3.222 17 H -0.187 1.187 18 H -0.176 1.176 19 H -0.205 1.205 20 O -0.306 6.306 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.006 0.994 34 H 0.040 0.960 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.839 -3.704 21.280 21.616 hybrid contribution -0.371 -1.029 -0.724 1.312 sum 0.468 -4.734 20.555 21.099 Atomic orbital electron populations 1.22400 0.95889 1.02725 1.02719 1.22371 0.94184 0.96555 0.85458 0.88504 1.22155 1.01396 0.96535 0.98100 1.21608 1.01447 0.95386 0.97129 1.22160 1.01736 0.99933 0.94585 1.22086 0.97719 0.82664 0.93801 0.92341 1.22081 1.00412 0.94629 0.89625 1.60262 1.14584 1.54795 1.01894 1.19756 0.95451 0.92412 0.87702 1.21350 1.30478 1.13897 0.91122 0.94750 1.25924 0.97524 1.00069 0.95547 1.70060 1.47129 1.41993 0.99671 0.85605 0.79312 0.78998 0.78316 1.18745 1.17597 1.20458 1.88133 1.73626 1.24956 1.43871 0.91868 0.89672 0.93471 0.91792 0.89045 0.89915 0.90979 0.89667 0.91558 0.93260 0.91848 0.84882 0.99411 0.96026 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 8.65 71.98 0.62 -3.16 16 2 C 0.07 1.70 3.91 30.62 0.12 1.82 16 3 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.14 -2.58 5.64 30.68 0.17 -2.41 16 5 C -0.12 -1.97 5.72 30.71 0.18 -1.80 16 6 C -0.15 -3.07 5.42 30.68 0.17 -2.91 16 7 C 0.10 2.71 2.52 30.62 0.08 2.79 16 8 H 0.06 1.61 6.34 -2.38 -0.02 1.60 16 9 C 0.06 2.13 5.38 86.30 0.46 2.59 16 10 N -0.68 -30.31 6.36 -517.94 -3.29 -33.60 16 11 C 0.18 8.86 4.51 85.56 0.39 9.24 16 12 C -0.53 -32.26 9.87 25.60 0.25 -32.00 16 13 H 0.03 2.32 8.06 -2.91 -0.02 2.30 16 14 C 0.01 0.40 5.47 84.65 0.46 0.87 16 15 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 16 Si 0.95 45.23 27.47 68.60 1.88 47.11 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 O -0.39 -12.64 10.10 -148.98 -1.50 -14.15 16 21 H 0.06 1.28 4.98 -2.39 -0.01 1.27 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.11 6.62 -2.39 -0.02 1.10 16 28 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.33 14.41 8.72 -89.69 -0.78 13.63 16 33 H -0.01 -0.56 7.57 -2.39 -0.02 -0.58 16 34 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -70.05 274.95 0.50 -69.55 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.22 Total: 16.61 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 2.90 Total: -24.96 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -2.99 Total: -94.16 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.50 Total: -14.15 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -70.05 0.50 -69.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.037 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds