Wall clock time and date at job start Mon Mar 30 2020 04:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47837 * 2 1 4 4 C 1.53090 * 109.48332 * 239.98128 * 2 1 3 5 5 C 1.53184 * 109.16250 * 297.61179 * 4 2 1 6 6 C 1.53177 * 109.03678 * 303.01845 * 5 4 2 7 7 C 1.53098 * 109.16044 * 56.97699 * 6 5 4 8 8 H 1.08999 * 109.47664 * 62.38706 * 7 6 5 9 9 C 1.53000 * 109.47644 * 182.40710 * 7 6 5 10 10 N 1.46901 * 109.46769 * 184.97752 * 9 7 6 11 11 C 1.46906 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47183 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99585 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47119 * 120.00029 * 16 14 12 19 19 H 1.48497 * 109.46822 * 239.99957 * 16 14 12 20 20 O 1.42902 * 109.48558 * 120.02356 * 2 1 3 21 21 H 1.09002 * 109.46869 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47329 * 300.01627 * 1 2 3 23 23 H 1.08997 * 109.46888 * 60.02384 * 1 2 3 24 24 H 1.09002 * 109.52989 * 177.70838 * 4 2 1 25 25 H 1.09003 * 109.57718 * 57.54482 * 4 2 1 26 26 H 1.08998 * 109.54588 * 183.14937 * 5 4 2 27 27 H 1.08999 * 109.54227 * 62.88473 * 5 4 2 28 28 H 1.08998 * 109.52338 * 297.07564 * 6 5 4 29 29 H 1.09000 * 109.57637 * 176.91430 * 6 5 4 30 30 H 1.09002 * 109.47398 * 304.98047 * 9 7 6 31 31 H 1.09001 * 109.47194 * 64.98227 * 9 7 6 32 32 H 1.00898 * 110.99877 * 56.04956 * 10 9 7 33 33 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 34 34 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 35 35 H 0.97003 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7220 -1.2496 5 6 1.5761 -2.1813 -1.2123 6 6 2.0771 -2.8322 0.0806 7 6 1.5651 -2.0285 1.2789 8 1 0.4756 -2.0554 1.2958 9 6 2.1107 -2.6374 2.5721 10 7 1.5256 -1.9413 3.7259 11 6 2.0282 -2.5001 4.9881 12 6 1.4069 -1.7631 6.1465 13 1 0.7088 -0.9597 5.9633 14 6 1.7304 -2.1138 7.4401 15 7 2.5809 -3.0918 7.6631 16 14 0.9607 -1.1997 8.8759 17 1 0.0449 -0.1504 8.3608 18 1 0.1966 -2.1546 9.7181 19 1 2.0295 -0.5671 9.6900 20 8 2.0067 -0.6741 1.1664 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 3.1298 -0.6870 -1.2712 25 1 1.6428 -0.2359 -2.1405 26 1 1.9829 -2.7155 -2.0709 27 1 0.4871 -2.2181 -1.2409 28 1 3.1670 -2.8397 0.0860 29 1 1.7054 -3.8550 0.1424 30 1 1.8491 -3.6947 2.6146 31 1 3.1952 -2.5302 2.5949 32 1 0.5176 -1.9710 3.6930 33 1 1.7664 -3.5565 5.0476 34 1 3.1122 -2.3917 5.0273 35 1 2.8089 -3.3383 8.5731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594732844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:11 Heat of formation + Delta-G solvation = -65.158518 kcal Electronic energy + Delta-G solvation = -14559.870934 eV Core-core repulsion = 12171.013861 eV Total energy + Delta-G solvation = -2388.857073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63568 -35.34546 -33.48072 -32.83254 -31.58071 -28.63639 -26.80514 -24.72350 -23.02121 -21.71500 -21.07983 -19.13477 -16.55648 -16.17992 -15.83497 -14.93698 -14.56983 -14.43565 -13.98161 -13.61594 -13.01976 -12.76581 -12.46031 -12.30967 -12.08870 -11.66258 -11.41615 -11.19821 -11.08505 -10.93027 -10.71513 -10.65349 -10.44748 -9.99768 -9.70041 -9.15231 -9.02707 -8.43192 -7.16277 -5.98141 -3.99426 3.34709 3.41621 3.47476 4.03753 4.47292 4.74534 4.78971 4.85704 5.00338 5.19392 5.37197 5.37959 5.42255 5.49849 5.55293 5.68504 5.75432 5.85398 5.89831 5.97635 6.03921 6.11779 6.14104 6.32240 6.33294 6.54709 7.31016 7.47918 7.63974 7.85699 8.19361 8.48338 8.69805 9.10511 9.65256 11.13232 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055795 B = 0.005870 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.717593 B = 4768.872004 C = 5092.264519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.093 3.907 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.681 5.681 11 C 0.193 3.807 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 O -0.350 6.350 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.325 0.675 33 H -0.016 1.016 34 H 0.028 0.972 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 2.128 -17.451 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.024 3.976 3 H 0.115 0.885 4 C -0.187 4.187 5 C -0.159 4.159 6 C -0.189 4.189 7 C 0.035 3.965 8 H 0.073 0.927 9 C -0.064 4.064 10 N -0.311 5.311 11 C 0.066 3.934 12 C -0.549 4.549 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 O -0.268 6.268 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.002 0.998 34 H 0.046 0.954 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.369 2.629 -17.165 17.526 hybrid contribution -0.943 -0.619 0.623 1.289 sum -3.312 2.010 -16.542 16.989 Atomic orbital electron populations 1.22441 0.96810 1.02553 1.02396 1.22112 0.93353 0.96459 0.85642 0.88523 1.22199 1.01689 0.96309 0.98545 1.21596 1.00863 0.95724 0.97675 1.22206 1.02078 0.99573 0.95094 1.22150 0.97675 0.82443 0.94208 0.92676 1.21904 1.00582 0.94206 0.89694 1.60573 1.10837 1.57441 1.02276 1.19568 0.96314 0.92603 0.84872 1.21244 1.25855 1.17526 0.90275 0.91894 1.24995 0.95361 0.95295 0.99030 1.69977 1.34235 1.29106 1.20625 0.86424 0.79074 0.79652 0.82166 1.19649 1.21149 1.21003 1.88184 1.72849 1.24209 1.41598 0.92077 0.91500 0.92204 0.91256 0.91447 0.91954 0.91802 0.91062 0.91195 0.95147 0.91071 0.85841 0.99785 0.95390 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.65 37.16 0.32 -1.78 16 2 C 0.08 1.05 3.91 -26.68 -0.10 0.94 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 4 C -0.15 -1.58 5.64 -26.59 -0.15 -1.73 16 5 C -0.12 -1.26 5.72 -26.54 -0.15 -1.41 16 6 C -0.15 -1.88 5.42 -26.59 -0.14 -2.03 16 7 C 0.09 1.45 2.49 -26.68 -0.07 1.38 16 8 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 9 C 0.07 1.25 5.35 -3.82 -0.02 1.23 16 10 N -0.68 -15.56 6.44 -115.05 -0.74 -16.31 16 11 C 0.19 5.29 5.44 -4.97 -0.03 5.26 16 12 C -0.51 -14.99 9.32 -34.44 -0.32 -15.31 16 13 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 16 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 O -0.35 -5.91 10.18 -35.23 -0.36 -6.27 16 21 H 0.06 0.69 4.98 -51.93 -0.26 0.44 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.33 7.05 8.72 -39.29 -0.34 6.71 16 33 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 278.66 15.07 4.20 4.20 Total: -1.00 -31.46 278.66 -7.84 -39.30 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.89 Total: 0.65 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.76 Total: -11.95 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.00 Total: -43.11 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.36 Total: -6.27 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.46 -7.84 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.856 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds