Wall clock time and date at job start Mon Mar 30 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47837 * 2 1 4 4 C 1.53090 * 109.48332 * 239.98128 * 2 1 3 5 5 C 1.53184 * 109.16250 * 297.61179 * 4 2 1 6 6 C 1.53177 * 109.03678 * 303.01845 * 5 4 2 7 7 C 1.53098 * 109.16044 * 56.97699 * 6 5 4 8 8 H 1.08999 * 109.47664 * 62.38706 * 7 6 5 9 9 C 1.53000 * 109.47644 * 182.40710 * 7 6 5 10 10 N 1.46901 * 109.46769 * 184.97752 * 9 7 6 11 11 C 1.46906 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47183 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99585 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47119 * 120.00029 * 16 14 12 19 19 H 1.48497 * 109.46822 * 239.99957 * 16 14 12 20 20 O 1.42902 * 109.48558 * 120.02356 * 2 1 3 21 21 H 1.09002 * 109.46869 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47329 * 300.01627 * 1 2 3 23 23 H 1.08997 * 109.46888 * 60.02384 * 1 2 3 24 24 H 1.09002 * 109.52989 * 177.70838 * 4 2 1 25 25 H 1.09003 * 109.57718 * 57.54482 * 4 2 1 26 26 H 1.08998 * 109.54588 * 183.14937 * 5 4 2 27 27 H 1.08999 * 109.54227 * 62.88473 * 5 4 2 28 28 H 1.08998 * 109.52338 * 297.07564 * 6 5 4 29 29 H 1.09000 * 109.57637 * 176.91430 * 6 5 4 30 30 H 1.09002 * 109.47398 * 304.98047 * 9 7 6 31 31 H 1.09001 * 109.47194 * 64.98227 * 9 7 6 32 32 H 1.00898 * 110.99877 * 56.04956 * 10 9 7 33 33 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 34 34 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 35 35 H 0.97003 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7220 -1.2496 5 6 1.5761 -2.1813 -1.2123 6 6 2.0771 -2.8322 0.0806 7 6 1.5651 -2.0285 1.2789 8 1 0.4756 -2.0554 1.2958 9 6 2.1107 -2.6374 2.5721 10 7 1.5256 -1.9413 3.7259 11 6 2.0282 -2.5001 4.9881 12 6 1.4069 -1.7631 6.1465 13 1 0.7088 -0.9597 5.9633 14 6 1.7304 -2.1138 7.4401 15 7 2.5809 -3.0918 7.6631 16 14 0.9607 -1.1997 8.8759 17 1 0.0449 -0.1504 8.3608 18 1 0.1966 -2.1546 9.7181 19 1 2.0295 -0.5671 9.6900 20 8 2.0067 -0.6741 1.1664 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 3.1298 -0.6870 -1.2712 25 1 1.6428 -0.2359 -2.1405 26 1 1.9829 -2.7155 -2.0709 27 1 0.4871 -2.2181 -1.2409 28 1 3.1670 -2.8397 0.0860 29 1 1.7054 -3.8550 0.1424 30 1 1.8491 -3.6947 2.6146 31 1 3.1952 -2.5302 2.5949 32 1 0.5176 -1.9710 3.6930 33 1 1.7664 -3.5565 5.0476 34 1 3.1122 -2.3917 5.0273 35 1 2.8089 -3.3383 8.5731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594732844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:10 Heat of formation + Delta-G solvation = -87.187223 kcal Electronic energy + Delta-G solvation = -14560.826170 eV Core-core repulsion = 12171.013861 eV Total energy + Delta-G solvation = -2389.812309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72771 -37.13189 -34.78730 -34.48639 -33.05611 -30.01425 -28.39564 -26.23624 -24.14220 -23.43440 -22.68427 -20.14300 -18.63008 -17.39944 -17.14484 -16.56217 -16.05167 -15.69587 -15.41345 -14.99069 -14.67296 -14.13280 -13.74642 -13.54881 -13.35388 -13.26656 -12.82384 -12.74300 -12.62791 -12.46608 -12.13565 -11.98186 -11.81113 -11.56424 -11.25765 -10.86311 -10.67736 -10.17388 -9.07919 -8.23311 -6.34782 1.40615 1.42144 1.56284 2.40151 2.91432 3.09743 3.46892 3.86694 3.94645 4.00272 4.11465 4.23817 4.37502 4.43123 4.48909 4.57136 4.72829 4.74818 4.87688 4.99169 5.04782 5.06937 5.12891 5.15950 5.23366 5.24739 5.34007 5.52340 5.60824 6.01004 6.43760 6.52246 6.73792 6.89009 7.36295 8.88834 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055795 B = 0.005870 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.717593 B = 4768.872004 C = 5092.264519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.100 0.900 4 C -0.145 4.145 5 C -0.118 4.118 6 C -0.148 4.148 7 C 0.100 3.900 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.684 5.684 11 C 0.208 3.792 12 C -0.536 4.536 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.977 3.023 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.278 1.278 20 O -0.387 6.387 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.333 0.667 33 H -0.037 1.037 34 H -0.004 1.004 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 2.741 -18.575 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.118 0.882 4 C -0.182 4.182 5 C -0.155 4.155 6 C -0.186 4.186 7 C 0.043 3.957 8 H 0.079 0.921 9 C -0.065 4.065 10 N -0.314 5.314 11 C 0.080 3.920 12 C -0.574 4.574 13 H 0.081 0.919 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.801 3.199 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.203 1.203 20 O -0.307 6.307 21 H 0.080 0.920 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.150 0.850 33 H -0.019 1.019 34 H 0.014 0.986 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.580 3.243 -18.321 18.948 hybrid contribution -0.529 -0.805 0.926 1.336 sum -4.110 2.438 -17.395 18.039 Atomic orbital electron populations 1.22396 0.95737 1.02711 1.02852 1.22389 0.94315 0.96561 0.85293 0.88243 1.22166 1.01383 0.96430 0.98257 1.21611 1.01496 0.95488 0.96887 1.22173 1.01652 0.99905 0.94862 1.22022 0.97737 0.82607 0.93384 0.92090 1.21999 0.99571 0.94881 0.90092 1.60442 1.11391 1.57854 1.01760 1.19218 0.94313 0.91443 0.87005 1.21569 1.26405 1.17982 0.91428 0.91890 1.25991 0.95613 0.96039 1.02151 1.70101 1.35294 1.30447 1.21718 0.85229 0.78276 0.78434 0.78006 1.18726 1.19982 1.20328 1.88115 1.73718 1.24854 1.44020 0.92013 0.93221 0.89574 0.91871 0.88838 0.89930 0.90839 0.91793 0.89971 0.94211 0.92726 0.85006 1.01935 0.98604 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.65 71.98 0.62 -3.11 16 2 C 0.07 1.71 3.91 30.62 0.12 1.83 16 3 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.14 -2.67 5.64 30.69 0.17 -2.50 16 5 C -0.12 -2.09 5.72 30.72 0.18 -1.92 16 6 C -0.15 -3.44 5.42 30.69 0.17 -3.27 16 7 C 0.10 3.06 2.49 30.63 0.08 3.14 16 8 H 0.06 1.77 6.34 -2.39 -0.02 1.76 16 9 C 0.06 2.47 5.35 86.30 0.46 2.93 16 10 N -0.68 -32.05 6.44 -517.91 -3.33 -35.38 16 11 C 0.21 11.82 5.44 85.56 0.47 12.29 16 12 C -0.54 -31.99 9.32 25.60 0.24 -31.76 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 14 C 0.00 0.00 5.46 84.65 0.46 0.46 16 15 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 16 Si 0.98 45.49 29.54 68.60 2.03 47.51 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 O -0.39 -13.01 10.18 -148.98 -1.52 -14.52 16 21 H 0.06 1.26 4.98 -2.39 -0.01 1.25 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.20 6.62 -2.39 -0.02 1.18 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.33 14.64 8.72 -89.70 -0.78 13.85 16 33 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.27 278.66 0.69 -67.58 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.27 Total: 14.50 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 2.96 Total: -21.89 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -3.05 Total: -93.17 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.52 Total: -14.52 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.27 0.69 -67.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.610 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds