Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47825 * 2 1 4 4 C 1.53085 * 109.48361 * 120.02551 * 2 1 3 5 5 C 1.53180 * 109.16261 * 62.38812 * 4 2 1 6 6 C 1.53001 * 109.54383 * 176.84514 * 5 4 2 7 7 N 1.46500 * 109.46941 * 175.17387 * 6 5 4 8 8 C 1.36943 * 119.99878 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99698 * 0.02562 * 8 7 6 10 10 C 1.38809 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31620 * 120.00319 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 59.99967 * 12 10 8 14 14 H 1.48503 * 109.47261 * 300.00148 * 12 10 8 15 15 H 1.48500 * 109.47454 * 180.02562 * 12 10 8 16 16 C 1.53175 * 109.11085 * 56.93553 * 5 4 2 17 17 C 1.53104 * 109.15514 * 303.15172 * 16 5 4 18 18 H 1.09003 * 109.41289 * 297.49191 * 17 16 5 19 19 C 1.53002 * 109.49014 * 177.50897 * 17 16 5 20 20 O 1.42905 * 109.48914 * 239.97817 * 2 1 3 21 21 H 1.08998 * 109.46949 * 299.97069 * 1 2 3 22 22 H 1.08990 * 109.47299 * 59.97422 * 1 2 3 23 23 H 1.08999 * 109.46443 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.52884 * 302.48077 * 4 2 1 25 25 H 1.09000 * 109.52489 * 182.28923 * 4 2 1 26 26 H 1.09006 * 109.54457 * 297.02236 * 5 4 2 27 27 H 1.09000 * 109.46906 * 55.17854 * 6 5 4 28 28 H 1.08992 * 109.47614 * 295.17588 * 6 5 4 29 29 H 0.97000 * 120.00415 * 359.97438 * 7 6 5 30 30 H 0.97001 * 119.99542 * 359.97438 * 11 10 8 31 31 H 1.09000 * 109.52684 * 62.97229 * 16 5 4 32 32 H 1.09009 * 109.52217 * 183.16322 * 16 5 4 33 33 H 1.08996 * 109.47286 * 299.96041 * 19 17 16 34 34 H 1.09001 * 109.47405 * 59.96400 * 19 17 16 35 35 H 1.09008 * 109.46848 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5761 -2.1813 1.2120 6 6 2.1473 -2.9314 2.4171 7 7 1.6103 -4.2942 2.4433 8 6 1.9830 -5.1580 3.4385 9 1 2.6724 -4.8343 4.2041 10 6 1.4738 -6.4490 3.4636 11 7 0.6332 -6.8433 2.5307 12 14 1.9816 -7.6270 4.8215 13 1 1.5919 -7.0620 6.1384 14 1 3.4532 -7.8225 4.7826 15 1 1.3039 -8.9333 4.6227 16 6 2.0753 -2.8335 -0.0810 17 6 1.5650 -2.0284 -1.2791 18 1 0.4754 -2.0551 -1.2960 19 6 2.1103 -2.6370 -2.5726 20 8 2.0068 -0.6740 -1.1664 21 1 -0.3633 0.5134 0.8902 22 1 -0.3633 0.5142 -0.8897 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6421 -0.2358 2.1398 25 1 3.1299 -0.6872 1.2710 26 1 0.4871 -2.2183 1.2422 27 1 1.8671 -2.4128 3.3339 28 1 3.2337 -2.9704 2.3392 29 1 0.9908 -4.5848 1.7558 30 1 0.3692 -6.2314 1.8258 31 1 3.1652 -2.8424 -0.0873 32 1 1.7013 -3.8556 -0.1414 33 1 3.1999 -2.6105 -2.5555 34 1 1.7733 -3.6700 -2.6585 35 1 1.7465 -2.0638 -3.4255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642875630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -56.737039 kcal Electronic energy + Delta-G solvation = -14919.046444 eV Core-core repulsion = 12530.554554 eV Total energy + Delta-G solvation = -2388.491890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82430 -35.67004 -33.44792 -33.10844 -30.64422 -29.03531 -26.52078 -25.28140 -23.09797 -22.16131 -20.72381 -19.11916 -17.27648 -16.15809 -15.86546 -15.13867 -14.54904 -14.21713 -13.94595 -13.60802 -13.12746 -12.69290 -12.56793 -12.30476 -11.93442 -11.80920 -11.62347 -11.49828 -10.89858 -10.74355 -10.72625 -10.48562 -10.19654 -9.97955 -9.80884 -9.28390 -9.03702 -8.85234 -6.97065 -6.08722 -3.07422 3.52608 3.56451 3.73854 3.86352 4.67652 4.85078 4.92199 4.98000 5.09583 5.21651 5.36095 5.44456 5.50949 5.58522 5.65464 5.68063 5.80309 5.87829 5.99263 6.02039 6.06977 6.12004 6.20434 6.23757 6.34952 6.46044 6.56962 6.73909 6.88615 7.40902 7.83081 8.77849 9.26044 10.12340 10.28063 11.40015 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046158 B = 0.007011 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.466717 B = 3992.609611 C = 4289.307606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.089 3.911 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.098 4.098 6 C 0.165 3.835 7 N -0.743 5.743 8 C -0.330 4.330 9 H 0.063 0.937 10 C -0.047 4.047 11 N -0.945 5.945 12 Si 1.080 2.920 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.137 4.137 17 C 0.082 3.918 18 H 0.058 0.942 19 C -0.143 4.143 20 O -0.379 6.379 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.366 0.634 30 H 0.254 0.746 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 12.601 -6.805 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.032 3.968 3 H 0.115 0.885 4 C -0.179 4.179 5 C -0.116 4.116 6 C 0.037 3.963 7 N -0.389 5.389 8 C -0.461 4.461 9 H 0.082 0.918 10 C -0.244 4.244 11 N -0.591 5.591 12 Si 0.911 3.089 13 H -0.223 1.223 14 H -0.223 1.223 15 H -0.210 1.210 16 C -0.175 4.175 17 C 0.025 3.975 18 H 0.076 0.924 19 C -0.200 4.200 20 O -0.299 6.299 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.199 0.801 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.220 11.203 -6.163 12.845 hybrid contribution -0.123 1.397 -0.453 1.473 sum 1.097 12.600 -6.616 14.273 Atomic orbital electron populations 1.22460 0.96692 1.03017 1.02226 1.22108 0.93301 0.95959 0.85455 0.88517 1.22171 1.01726 0.96109 0.97907 1.21411 1.00451 0.93942 0.95838 1.20602 0.95826 0.86033 0.93828 1.42380 1.55239 1.09044 1.32222 1.20054 1.25421 0.95362 1.05305 0.91849 1.25778 0.98611 0.96431 1.03596 1.70888 1.35454 1.37811 1.14932 0.83235 0.75262 0.76112 0.74261 1.22301 1.22292 1.21010 1.22195 1.01737 0.99880 0.93656 1.22135 0.97900 0.82028 0.95468 0.92439 1.21753 1.01972 1.00420 0.95884 1.87920 1.73971 1.24881 1.43087 0.91613 0.92231 0.91612 0.91064 0.91152 0.91145 0.96401 0.96310 0.80054 0.93520 0.91365 0.90452 0.91983 0.91021 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 8.65 37.16 0.32 -1.85 16 2 C 0.09 1.14 3.91 -26.68 -0.10 1.03 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -1.97 4.93 -26.59 -0.13 -2.10 16 5 C -0.10 -1.65 2.00 -90.44 -0.18 -1.83 16 6 C 0.16 3.49 5.66 -4.04 -0.02 3.46 16 7 N -0.74 -19.32 5.36 -59.91 -0.32 -19.65 16 8 C -0.33 -9.63 9.99 -15.06 -0.15 -9.78 16 9 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 11 N -0.94 -29.67 13.70 55.49 0.76 -28.91 16 12 Si 1.08 26.39 29.92 -169.99 -5.09 21.30 16 13 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C -0.14 -2.27 4.54 -26.59 -0.12 -2.39 16 17 C 0.08 1.17 2.93 -26.68 -0.08 1.10 16 18 H 0.06 0.80 6.34 -51.93 -0.33 0.48 16 19 C -0.14 -1.80 9.57 37.16 0.36 -1.44 16 20 O -0.38 -5.54 10.24 -35.23 -0.36 -5.90 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.84 4.98 -51.93 -0.26 0.58 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.37 9.63 5.72 -40.82 -0.23 9.39 16 30 H 0.25 7.83 6.77 -40.82 -0.28 7.55 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.41 7.29 -51.92 -0.38 1.04 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 273.33 15.07 4.12 4.12 Total: -1.00 -31.91 273.33 -6.77 -38.68 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.68 Total: 5.64 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.21 Total: -15.29 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.44 Total: -48.55 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.36 Total: -5.90 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -5.09 Total: 21.30 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.91 -6.77 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642875630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.054 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds