Wall clock time and date at job start Mon Mar 30 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.48795 * 2 1 4 4 C 1.53099 * 109.48221 * 239.97357 * 2 1 3 5 5 C 1.53175 * 109.16130 * 182.41073 * 4 2 1 6 6 C 1.53004 * 109.54230 * 176.84605 * 5 4 2 7 7 N 1.46499 * 109.47198 * 174.99898 * 6 5 4 8 8 C 1.36939 * 119.99933 * 180.27608 * 7 6 5 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 6 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 6 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47173 * 60.00435 * 12 10 8 14 14 H 1.48497 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47132 * 300.00314 * 12 10 8 16 16 C 1.53172 * 109.03796 * 56.97902 * 5 4 2 17 17 C 1.53092 * 109.16674 * 303.01675 * 16 5 4 18 18 H 1.08992 * 109.48131 * 177.59055 * 17 16 5 19 19 C 1.53000 * 109.47873 * 297.62881 * 17 16 5 20 20 O 1.42901 * 109.41264 * 57.60773 * 17 16 5 21 21 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47077 * 300.03165 * 1 2 3 23 23 H 1.09005 * 109.46891 * 60.02861 * 1 2 3 24 24 H 1.08994 * 109.52187 * 62.50177 * 4 2 1 25 25 H 1.08997 * 109.52045 * 302.31630 * 4 2 1 26 26 H 1.08997 * 109.54356 * 297.02175 * 5 4 2 27 27 H 1.09009 * 109.46730 * 54.99685 * 6 5 4 28 28 H 1.08998 * 109.46846 * 295.00229 * 6 5 4 29 29 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 30 30 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.52324 * 62.92581 * 16 5 4 32 32 H 1.09007 * 109.52498 * 183.11043 * 16 5 4 33 33 H 1.09001 * 109.46930 * 179.97438 * 19 17 16 34 34 H 1.08998 * 109.47105 * 299.93984 * 19 17 16 35 35 H 1.08996 * 109.47177 * 59.94006 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7709 -1.2121 6 6 4.0878 -1.5594 -2.4172 7 7 5.5515 -1.5041 -2.4458 8 6 6.2412 -2.1377 -3.4449 9 1 5.7062 -2.6818 -4.2093 10 6 7.6277 -2.0804 -3.4754 11 7 8.2796 -1.4176 -2.5436 12 14 8.5685 -2.9453 -4.8378 13 1 8.1577 -2.3902 -6.1525 14 1 10.0256 -2.7341 -4.6444 15 1 8.2702 -4.3995 -4.7994 16 6 4.0176 -1.4601 0.0809 17 6 3.4307 -0.7094 1.2791 18 1 3.7099 -1.2204 2.2004 19 6 3.9761 0.7199 1.3026 20 8 2.0066 -0.6742 1.1664 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8903 24 1 1.7149 -0.1843 -2.1399 25 1 1.6443 -1.7374 -1.2710 26 1 3.9690 0.2435 -1.2423 27 1 3.6897 -1.1242 -3.3339 28 1 3.7648 -2.5974 -2.3377 29 1 6.0318 -1.0151 -1.7595 30 1 9.2486 -1.3780 -2.5647 31 1 3.6613 -2.4902 0.0863 32 1 5.1059 -1.4498 0.1421 33 1 3.5578 1.2544 2.1555 34 1 5.0623 0.6930 1.3885 35 1 3.6971 1.2305 0.3809 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642875631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:39 Heat of formation + Delta-G solvation = -56.941844 kcal Electronic energy + Delta-G solvation = -14861.366356 eV Core-core repulsion = 12472.865585 eV Total energy + Delta-G solvation = -2388.500771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74105 -35.48396 -33.19582 -33.03915 -30.67380 -29.13729 -26.42511 -25.48919 -22.77401 -22.44851 -20.49570 -19.03579 -17.10711 -16.09667 -15.65808 -15.05179 -14.43704 -14.37207 -13.76313 -13.18879 -12.94300 -12.81303 -12.58405 -12.18062 -11.89716 -11.69247 -11.50230 -11.47852 -10.92525 -10.79421 -10.78486 -10.40521 -10.26312 -10.07868 -9.75779 -9.61937 -9.05890 -8.83765 -6.88577 -5.74386 -3.02338 3.45542 3.49589 3.50843 3.92733 4.60321 4.89506 4.98481 5.14560 5.17514 5.29345 5.39484 5.54681 5.60712 5.61954 5.64528 5.72790 5.81198 5.95522 6.09808 6.10722 6.17917 6.21719 6.27368 6.33275 6.46056 6.57736 6.66395 6.83758 6.98175 7.48365 7.71728 8.45181 9.55989 10.14908 10.49926 11.48725 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054099 B = 0.006748 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.442976 B = 4148.276637 C = 4482.793002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.058 0.942 4 C -0.141 4.141 5 C -0.096 4.096 6 C 0.159 3.841 7 N -0.732 5.732 8 C -0.239 4.239 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.935 5.935 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.138 4.138 17 C 0.087 3.913 18 H 0.097 0.903 19 C -0.185 4.185 20 O -0.380 6.380 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.383 0.617 30 H 0.255 0.745 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 3.610 6.541 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.076 0.924 4 C -0.179 4.179 5 C -0.115 4.115 6 C 0.031 3.969 7 N -0.376 5.376 8 C -0.370 4.370 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.584 5.584 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.176 4.176 17 C 0.030 3.970 18 H 0.115 0.885 19 C -0.242 4.242 20 O -0.300 6.300 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.217 0.783 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.795 3.429 6.528 14.767 hybrid contribution 1.025 -0.210 -0.790 1.311 sum -11.770 3.219 5.738 13.484 Atomic orbital electron populations 1.21756 0.93678 1.02665 1.01933 1.22055 0.94330 0.95453 0.85602 0.92424 1.22209 0.96291 1.01614 0.97772 1.21387 0.94047 1.00247 0.95813 1.20670 0.86131 0.96249 0.93823 1.42365 0.99623 1.63484 1.32120 1.19208 0.89174 1.25064 1.03535 0.91316 1.24728 0.96383 1.01101 0.98847 1.69650 1.07109 1.46539 1.35129 0.86259 0.78990 0.79297 0.81600 1.21314 1.21686 1.21299 1.22171 1.02099 0.99520 0.93793 1.22198 0.80396 0.95558 0.98874 0.88494 1.22446 1.02197 0.97448 1.02158 1.87910 1.21235 1.77848 1.42983 0.91981 0.92269 0.91347 0.91241 0.91221 0.91016 0.96509 0.96405 0.78288 0.93510 0.91468 0.89933 0.92516 0.91160 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.56 37.16 0.36 -1.16 16 2 C 0.08 1.08 2.94 -26.68 -0.08 1.00 16 3 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 4 C -0.14 -1.98 4.71 -26.59 -0.13 -2.11 16 5 C -0.10 -1.63 2.00 -90.44 -0.18 -1.81 16 6 C 0.16 3.32 5.66 -4.04 -0.02 3.30 16 7 N -0.73 -18.92 5.36 -59.90 -0.32 -19.24 16 8 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 11 N -0.94 -28.56 13.06 55.49 0.72 -27.83 16 12 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 C -0.14 -2.28 4.76 -26.59 -0.13 -2.41 16 17 C 0.09 1.24 3.91 -26.68 -0.10 1.14 16 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.19 -2.44 8.65 37.16 0.32 -2.12 16 20 O -0.38 -5.60 10.24 -35.23 -0.36 -5.96 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 27 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.38 10.30 6.90 -40.82 -0.28 10.02 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.52 7.31 -51.93 -0.38 1.14 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.86 4.98 -51.93 -0.26 0.60 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -30.61 275.06 -6.83 -37.44 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.79 Total: 5.45 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.21 Total: -11.67 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.40 Total: -47.08 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.36 Total: -5.96 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.61 -6.83 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642875631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.504 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds