Wall clock time and date at job start Mon Mar 30 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.48795 * 2 1 4 4 C 1.53099 * 109.48221 * 239.97357 * 2 1 3 5 5 C 1.53175 * 109.16130 * 182.41073 * 4 2 1 6 6 C 1.53004 * 109.54230 * 176.84605 * 5 4 2 7 7 N 1.46499 * 109.47198 * 174.99898 * 6 5 4 8 8 C 1.36939 * 119.99933 * 180.27608 * 7 6 5 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 6 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 6 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47173 * 60.00435 * 12 10 8 14 14 H 1.48497 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47132 * 300.00314 * 12 10 8 16 16 C 1.53172 * 109.03796 * 56.97902 * 5 4 2 17 17 C 1.53092 * 109.16674 * 303.01675 * 16 5 4 18 18 H 1.08992 * 109.48131 * 177.59055 * 17 16 5 19 19 C 1.53000 * 109.47873 * 297.62881 * 17 16 5 20 20 O 1.42901 * 109.41264 * 57.60773 * 17 16 5 21 21 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47077 * 300.03165 * 1 2 3 23 23 H 1.09005 * 109.46891 * 60.02861 * 1 2 3 24 24 H 1.08994 * 109.52187 * 62.50177 * 4 2 1 25 25 H 1.08997 * 109.52045 * 302.31630 * 4 2 1 26 26 H 1.08997 * 109.54356 * 297.02175 * 5 4 2 27 27 H 1.09009 * 109.46730 * 54.99685 * 6 5 4 28 28 H 1.08998 * 109.46846 * 295.00229 * 6 5 4 29 29 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 30 30 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.52324 * 62.92581 * 16 5 4 32 32 H 1.09007 * 109.52498 * 183.11043 * 16 5 4 33 33 H 1.09001 * 109.46930 * 179.97438 * 19 17 16 34 34 H 1.08998 * 109.47105 * 299.93984 * 19 17 16 35 35 H 1.08996 * 109.47177 * 59.94006 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7709 -1.2121 6 6 4.0878 -1.5594 -2.4172 7 7 5.5515 -1.5041 -2.4458 8 6 6.2412 -2.1377 -3.4449 9 1 5.7062 -2.6818 -4.2093 10 6 7.6277 -2.0804 -3.4754 11 7 8.2796 -1.4176 -2.5436 12 14 8.5685 -2.9453 -4.8378 13 1 8.1577 -2.3902 -6.1525 14 1 10.0256 -2.7341 -4.6444 15 1 8.2702 -4.3995 -4.7994 16 6 4.0176 -1.4601 0.0809 17 6 3.4307 -0.7094 1.2791 18 1 3.7099 -1.2204 2.2004 19 6 3.9761 0.7199 1.3026 20 8 2.0066 -0.6742 1.1664 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8903 24 1 1.7149 -0.1843 -2.1399 25 1 1.6443 -1.7374 -1.2710 26 1 3.9690 0.2435 -1.2423 27 1 3.6897 -1.1242 -3.3339 28 1 3.7648 -2.5974 -2.3377 29 1 6.0318 -1.0151 -1.7595 30 1 9.2486 -1.3780 -2.5647 31 1 3.6613 -2.4902 0.0863 32 1 5.1059 -1.4498 0.1421 33 1 3.5578 1.2544 2.1555 34 1 5.0623 0.6930 1.3885 35 1 3.6971 1.2305 0.3809 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642875631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:39 Heat of formation + Delta-G solvation = -76.496924 kcal Electronic energy + Delta-G solvation = -14862.214328 eV Core-core repulsion = 12472.865585 eV Total energy + Delta-G solvation = -2389.348743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93120 -37.16416 -34.83090 -34.23933 -32.49622 -30.43097 -27.56953 -27.24070 -24.64364 -23.60407 -21.90618 -20.25252 -19.19114 -17.23845 -16.88952 -16.76628 -16.03948 -15.62294 -15.28209 -15.04654 -14.53901 -14.14694 -13.64903 -13.36582 -13.16972 -12.91602 -12.80570 -12.76224 -12.68099 -12.59342 -12.17608 -11.96429 -11.89978 -11.73457 -11.41503 -10.98674 -10.84698 -10.27314 -9.01271 -7.96617 -5.25505 1.46013 1.49346 1.55603 2.54960 2.86836 3.36388 3.67092 3.77836 3.88754 4.01092 4.17975 4.24228 4.38813 4.43410 4.45977 4.62769 4.64203 4.76319 4.83818 4.90076 4.99311 5.04272 5.07730 5.12480 5.20549 5.26733 5.33228 5.39656 5.45682 5.53808 6.25791 6.38386 7.32033 8.07810 8.32463 9.26833 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054099 B = 0.006748 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.442976 B = 4148.276637 C = 4482.793002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 H 0.064 0.936 4 C -0.134 4.134 5 C -0.088 4.088 6 C 0.158 3.842 7 N -0.743 5.743 8 C -0.251 4.251 9 H 0.073 0.927 10 C -0.074 4.074 11 N -0.969 5.969 12 Si 0.975 3.025 13 H -0.277 1.277 14 H -0.293 1.293 15 H -0.278 1.278 16 C -0.134 4.134 17 C 0.091 3.909 18 H 0.109 0.891 19 C -0.181 4.181 20 O -0.388 6.388 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.375 0.625 30 H 0.252 0.748 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 3.823 6.356 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.022 3.978 3 H 0.082 0.918 4 C -0.173 4.173 5 C -0.106 4.106 6 C 0.031 3.969 7 N -0.386 5.386 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.804 3.196 13 H -0.203 1.203 14 H -0.219 1.219 15 H -0.205 1.205 16 C -0.172 4.172 17 C 0.034 3.966 18 H 0.127 0.873 19 C -0.238 4.238 20 O -0.308 6.308 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.207 0.793 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.114 3.636 6.335 15.892 hybrid contribution 1.368 -0.283 -0.734 1.578 sum -12.747 3.352 5.600 14.321 Atomic orbital electron populations 1.21761 0.91518 1.03013 1.03321 1.22228 0.95991 0.95278 0.84280 0.91814 1.22183 0.93670 1.02077 0.99334 1.21284 0.96178 0.99080 0.94105 1.20824 0.83595 0.96675 0.95797 1.42555 1.01589 1.63109 1.31349 1.19619 0.89833 1.24794 1.04008 0.90906 1.25575 0.97348 1.02312 1.01392 1.69810 1.07020 1.48135 1.37010 0.85189 0.77152 0.78376 0.78900 1.20333 1.21917 1.20450 1.22093 1.00547 0.99504 0.95048 1.22166 0.80442 0.95990 0.98026 0.87341 1.22401 1.01904 0.96793 1.02725 1.87916 1.21003 1.78175 1.43706 0.92158 0.91457 0.89442 0.89772 0.91406 0.91507 0.96296 0.96785 0.79297 0.93911 0.92345 0.92493 0.90753 0.91689 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.56 71.98 0.69 -1.84 16 2 C 0.08 1.89 2.94 30.63 0.09 1.98 16 3 H 0.06 1.46 6.34 -2.39 -0.02 1.44 16 4 C -0.13 -3.56 4.71 30.69 0.14 -3.42 16 5 C -0.09 -2.93 2.00 -10.68 -0.02 -2.95 16 6 C 0.16 6.59 5.66 86.38 0.49 7.08 16 7 N -0.74 -38.98 5.36 -343.44 -1.84 -40.82 16 8 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 9 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 12 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 C -0.13 -4.45 4.76 30.68 0.15 -4.30 16 17 C 0.09 2.50 3.91 30.62 0.12 2.62 16 18 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 19 C -0.18 -4.54 8.65 71.98 0.62 -3.92 16 20 O -0.39 -10.68 10.24 -148.98 -1.52 -12.20 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 2.31 6.62 -2.39 -0.02 2.29 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.37 20.67 6.90 -92.71 -0.64 20.03 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.17 7.31 -2.38 -0.02 2.15 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.53 4.98 -2.39 -0.01 1.52 16 Total: -1.00 -64.38 275.06 2.94 -61.44 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.41 Total: 24.76 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.59 Total: -22.19 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -1.56 Total: -100.53 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.52 Total: -12.20 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -64.38 2.94 -61.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642875631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.060 kcal (2) G-P(sol) polarization free energy of solvation -64.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds