Wall clock time and date at job start Mon Mar 30 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47055 * 2 1 4 4 N 1.46501 * 109.47199 * 120.00002 * 2 1 3 5 5 C 1.36933 * 119.99919 * 181.71538 * 4 2 1 6 6 H 1.08003 * 120.00128 * 156.22297 * 5 4 2 7 7 C 1.38815 * 120.00086 * 336.22035 * 5 4 2 8 8 N 1.31614 * 120.00126 * 6.74967 * 7 5 4 9 9 Si 1.86799 * 119.99864 * 186.74595 * 7 5 4 10 10 H 1.48506 * 109.46982 * 90.00471 * 9 7 5 11 11 H 1.48506 * 109.46919 * 209.99993 * 9 7 5 12 12 H 1.48496 * 109.47421 * 330.00398 * 9 7 5 13 13 C 1.46497 * 119.99909 * 1.71448 * 4 2 1 14 14 C 1.53002 * 109.47094 * 96.34698 * 13 4 2 15 15 C 1.52998 * 112.99757 * 299.86998 * 14 13 4 16 16 C 1.54034 * 113.92616 * 71.80258 * 14 13 4 17 17 O 1.44182 * 85.51889 * 136.81505 * 16 14 13 18 18 C 1.44180 * 93.33921 * 335.80897 * 17 16 14 19 19 H 1.09009 * 109.47297 * 299.99812 * 1 2 3 20 20 H 1.09004 * 109.47356 * 59.99840 * 1 2 3 21 21 H 1.08997 * 109.47517 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47344 * 240.00171 * 2 1 3 23 23 H 1.09000 * 109.46821 * 174.19833 * 3 2 1 24 24 H 1.08998 * 109.47077 * 294.19556 * 3 2 1 25 25 H 1.09005 * 109.46810 * 54.19817 * 3 2 1 26 26 H 0.96995 * 120.00713 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47003 * 336.34755 * 13 4 2 28 28 H 1.09001 * 109.47027 * 216.35098 * 13 4 2 29 29 H 1.09000 * 109.47219 * 297.83830 * 15 14 13 30 30 H 1.09000 * 109.47239 * 57.84432 * 15 14 13 31 31 H 1.09010 * 109.46821 * 177.84161 * 15 14 13 32 32 H 1.08993 * 113.86376 * 250.96452 * 16 14 13 33 33 H 1.09004 * 113.86499 * 22.67291 * 16 14 13 34 34 H 1.09001 * 113.85976 * 270.04360 * 18 17 16 35 35 H 1.08994 * 113.98262 * 138.35258 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.3641 -0.7850 1.4307 6 1 3.7280 -0.9296 2.4373 7 6 4.2607 -0.6951 0.3748 8 7 3.8297 -0.3872 -0.8300 9 14 6.0789 -1.0109 0.6640 10 1 6.3690 -2.4533 0.4620 11 1 6.8795 -0.2062 -0.2935 12 1 6.4337 -0.6245 2.0532 13 6 1.0668 -1.2801 2.1413 14 6 0.8972 -2.7690 1.8324 15 6 0.3681 -3.0301 0.4208 16 6 2.1196 -3.6280 2.2074 17 8 1.1580 -4.5650 2.7328 18 6 0.1522 -3.5512 2.9306 19 1 -0.3634 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1250 1.4443 0.1039 24 1 1.7640 1.9255 -0.9374 25 1 1.5942 1.9855 0.8335 26 1 4.4562 -0.3240 -1.5678 27 1 0.1040 -0.7778 2.0485 28 1 1.4426 -1.1603 3.1575 29 1 -0.6225 -2.5875 0.3164 30 1 1.0441 -2.5842 -0.3089 31 1 0.3059 -4.1048 0.2491 32 1 2.6759 -4.0022 1.3480 33 1 2.7581 -3.1783 2.9678 34 1 0.1900 -3.0780 3.9118 35 1 -0.8527 -3.8625 2.6456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:20 Heat of formation + Delta-G solvation = 2.807284 kcal Electronic energy + Delta-G solvation = -15737.769214 eV Core-core repulsion = 13351.859360 eV Total energy + Delta-G solvation = -2385.909855 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.48253 -38.32580 -34.08474 -33.10851 -31.32203 -27.89280 -27.71608 -27.22716 -26.08896 -24.39394 -20.97518 -19.46422 -18.48886 -17.03002 -16.84687 -16.68304 -16.22433 -15.71947 -15.18720 -15.01310 -14.22957 -13.58017 -13.43811 -13.31876 -12.99918 -12.78933 -12.66586 -12.56608 -12.53037 -12.16181 -11.92970 -11.69598 -11.46125 -11.32168 -11.09039 -10.87886 -10.44441 -10.23097 -8.57420 -7.57469 -5.11263 1.47271 1.51381 1.55358 2.56931 2.95068 3.37614 3.49110 3.93690 4.09989 4.35528 4.49197 4.53884 4.64979 4.71515 4.78604 4.90493 4.95703 5.00878 5.06584 5.16061 5.18276 5.21829 5.26544 5.37762 5.40505 5.51356 5.52754 5.61368 5.71591 6.18984 6.24270 6.57270 7.37912 8.09696 8.50435 9.31483 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.014390 C = 0.010483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.484274 B = 1945.352175 C = 2670.426213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 C -0.120 4.120 4 N -0.602 5.602 5 C -0.234 4.234 6 H 0.062 0.938 7 C -0.039 4.039 8 N -0.919 5.919 9 Si 0.940 3.060 10 H -0.292 1.292 11 H -0.301 1.301 12 H -0.277 1.277 13 C 0.151 3.849 14 C -0.136 4.136 15 C -0.111 4.111 16 C 0.058 3.942 17 O -0.412 6.412 18 C 0.045 3.955 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.016 0.984 26 H 0.240 0.760 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 -2.112 3.973 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.078 3.922 3 C -0.178 4.178 4 N -0.324 5.324 5 C -0.364 4.364 6 H 0.080 0.920 7 C -0.234 4.234 8 N -0.567 5.567 9 Si 0.771 3.229 10 H -0.220 1.220 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.025 3.975 14 C -0.139 4.139 15 C -0.168 4.168 16 C -0.018 4.018 17 O -0.331 6.331 18 C -0.032 4.032 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.065 -2.339 3.878 9.250 hybrid contribution 1.594 0.165 -0.166 1.611 sum -6.471 -2.175 3.712 7.771 Atomic orbital electron populations 1.22502 0.96949 1.02399 1.00634 1.20612 0.89826 0.91240 0.90521 1.21966 1.01478 0.97812 0.96592 1.44191 1.01515 1.62214 1.24513 1.19248 0.83388 1.41904 0.91902 0.92029 1.25494 1.00196 1.02130 0.95556 1.70205 1.32411 1.53995 1.00113 0.85665 0.83136 0.77230 0.76892 1.21994 1.22783 1.20270 1.21036 0.93954 0.90218 0.92316 1.24093 0.94471 0.98651 0.96715 1.21479 1.00637 1.00121 0.94513 1.23743 0.92950 0.88150 0.96982 1.89531 1.27659 1.30147 1.85791 1.24196 0.93743 0.86869 0.98376 0.93202 0.92807 0.91017 0.91810 0.93684 0.95437 0.96490 0.94954 0.91009 0.94457 0.90574 0.93569 0.93458 0.91737 0.90992 0.89225 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.83 7.78 71.98 0.56 -5.27 16 2 C 0.18 8.17 1.93 44.99 0.09 8.25 16 3 C -0.12 -5.49 8.58 71.98 0.62 -4.87 16 4 N -0.60 -27.21 2.39 -678.04 -1.62 -28.83 16 5 C -0.23 -11.88 8.31 84.03 0.70 -11.18 16 6 H 0.06 3.14 7.84 -2.91 -0.02 3.11 16 7 C -0.04 -2.08 4.66 84.86 0.40 -1.68 16 8 N -0.92 -50.56 8.43 21.65 0.18 -50.38 16 9 Si 0.94 44.16 29.56 68.60 2.03 46.19 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.15 5.54 4.74 86.38 0.41 5.95 16 14 C -0.14 -4.64 1.14 -51.48 -0.06 -4.69 16 15 C -0.11 -3.71 7.41 71.98 0.53 -3.17 16 16 C 0.06 2.21 7.54 72.27 0.55 2.76 16 17 O -0.41 -14.68 12.37 -148.98 -1.84 -16.52 16 18 C 0.05 1.27 8.36 72.28 0.60 1.88 16 19 H 0.05 1.61 7.02 -2.38 -0.02 1.60 16 20 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 21 H 0.07 2.31 3.76 -2.39 -0.01 2.30 16 22 H 0.06 3.35 5.81 -2.39 -0.01 3.34 16 23 H 0.04 2.36 5.65 -2.39 -0.01 2.35 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.24 13.21 8.31 -92.71 -0.77 12.44 16 27 H 0.07 2.35 5.46 -2.39 -0.01 2.34 16 28 H 0.04 1.37 8.09 -2.39 -0.02 1.35 16 29 H 0.08 2.16 6.33 -2.39 -0.02 2.14 16 30 H 0.05 1.87 6.71 -2.39 -0.02 1.85 16 31 H 0.05 1.52 8.09 -2.38 -0.02 1.50 16 32 H 0.06 2.67 8.10 -2.39 -0.02 2.65 16 33 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 34 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 35 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 Total: -1.00 -56.69 264.40 4.20 -52.50 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.06 Total: 9.08 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.39 Total: -12.03 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.44 Total: -79.21 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.84 Total: -16.52 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -56.69 4.20 -52.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.304 kcal (2) G-P(sol) polarization free energy of solvation -56.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds