Wall clock time and date at job start Mon Mar 30 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47194 * 2 1 4 4 N 1.46502 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99792 * 87.01703 * 4 3 2 6 6 H 1.07997 * 120.00384 * 34.19028 * 5 4 3 7 7 C 1.38815 * 120.00141 * 214.18244 * 5 4 3 8 8 N 1.31625 * 119.99653 * 22.28320 * 7 5 4 9 9 Si 1.86790 * 120.00394 * 202.55784 * 7 5 4 10 10 H 1.48496 * 109.47116 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47366 * 120.00134 * 9 7 5 12 12 H 1.48495 * 109.47327 * 240.00051 * 9 7 5 13 13 C 1.46496 * 120.00298 * 267.02108 * 4 3 2 14 14 C 1.53002 * 109.46984 * 269.99928 * 13 4 3 15 15 C 1.52999 * 113.00013 * 50.33070 * 14 13 4 16 16 C 1.54036 * 113.81615 * 278.50172 * 14 13 4 17 17 O 1.44441 * 85.42728 * 223.23580 * 16 14 13 18 18 C 1.44176 * 93.37973 * 24.08893 * 17 16 14 19 19 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47215 * 300.00091 * 1 2 3 21 21 H 1.08996 * 109.46816 * 60.00158 * 1 2 3 22 22 H 1.09005 * 109.47426 * 239.99605 * 2 1 3 23 23 H 1.09003 * 109.47450 * 119.99802 * 2 1 3 24 24 H 1.08998 * 109.47550 * 59.99728 * 3 2 1 25 25 H 1.09000 * 109.47569 * 299.99823 * 3 2 1 26 26 H 0.96997 * 119.99940 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47241 * 29.99513 * 13 4 3 28 28 H 1.08996 * 109.47391 * 149.99800 * 13 4 3 29 29 H 1.08999 * 109.47250 * 60.00407 * 15 14 13 30 30 H 1.09003 * 109.47438 * 179.97438 * 15 14 13 31 31 H 1.08998 * 109.47221 * 299.99770 * 15 14 13 32 32 H 1.08991 * 113.86402 * 337.34737 * 16 14 13 33 33 H 1.09005 * 113.85823 * 109.04983 * 16 14 13 34 34 H 1.08998 * 113.86971 * 221.76126 * 18 17 16 35 35 H 1.09006 * 113.98409 * 90.07527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.3806 -1.1834 6 1 3.7905 1.8609 -2.0643 7 6 5.3985 0.7008 -1.2514 8 7 5.6818 -0.2282 -0.3630 9 14 6.6257 1.1095 -2.5990 10 1 6.0750 2.1870 -3.4598 11 1 7.8988 1.5677 -1.9869 12 1 6.8793 -0.1007 -3.4213 13 6 4.2370 1.5086 1.2679 14 6 4.4918 2.9722 1.6338 15 6 3.2288 3.8333 1.5689 16 6 5.7045 3.5914 0.9136 17 8 6.0262 4.1689 2.1979 18 6 5.3048 3.1571 2.9291 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6767 1.9563 -0.8900 26 1 6.5260 -0.7036 -0.4107 27 1 3.6476 1.0351 2.0531 28 1 5.1894 0.9887 1.1649 29 1 2.4865 3.4426 2.2649 30 1 3.4748 4.8602 1.8395 31 1 2.8253 3.8107 0.5566 32 1 6.4319 2.8584 0.5650 33 1 5.4381 4.3253 0.1529 34 1 4.7221 3.5471 3.7636 35 1 5.9082 2.2902 3.1986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:26 Heat of formation + Delta-G solvation = -20.559316 kcal Electronic energy + Delta-G solvation = -15379.932183 eV Core-core repulsion = 12993.009076 eV Total energy + Delta-G solvation = -2386.923107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42561 -37.83834 -34.58305 -33.51365 -31.63220 -28.09721 -27.47199 -27.14783 -26.15735 -23.47675 -21.66802 -19.71186 -18.58595 -16.98266 -16.77463 -16.72700 -16.22819 -15.82782 -15.45828 -14.82958 -14.40258 -14.12226 -13.56745 -13.43652 -13.04309 -12.87333 -12.81098 -12.67674 -12.47159 -12.23349 -11.96360 -11.87677 -11.66689 -11.32119 -11.16380 -11.08782 -10.59615 -10.36171 -8.50766 -7.76992 -5.33239 1.42123 1.48634 1.55261 2.52546 2.90778 3.26482 3.43550 3.88758 4.15100 4.31299 4.36813 4.46051 4.51459 4.59735 4.67740 4.72213 4.85884 4.91332 5.00184 5.05542 5.08232 5.17867 5.26114 5.30748 5.35883 5.39391 5.50130 5.50986 5.65218 5.74423 5.90751 6.51578 7.22834 7.94638 8.44883 9.18417 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.016780 C = 0.009880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.148001 B = 1668.256872 C = 2833.278351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.592 5.592 5 C -0.246 4.246 6 H 0.054 0.946 7 C -0.031 4.031 8 N -0.916 5.916 9 Si 0.934 3.066 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.296 1.296 13 C 0.155 3.845 14 C -0.136 4.136 15 C -0.106 4.106 16 C 0.057 3.943 17 O -0.408 6.408 18 C 0.043 3.957 19 H 0.052 0.948 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.248 0.752 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 4.818 4.404 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.312 5.312 5 C -0.377 4.377 6 H 0.072 0.928 7 C -0.228 4.228 8 N -0.561 5.561 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.223 1.223 13 C 0.028 3.972 14 C -0.138 4.138 15 C -0.163 4.163 16 C -0.020 4.020 17 O -0.327 6.327 18 C -0.034 4.034 19 H 0.071 0.929 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.811 4.964 4.478 8.858 hybrid contribution 1.031 -0.485 -0.940 1.477 sum -4.779 4.479 3.538 7.445 Atomic orbital electron populations 1.21660 0.94324 1.01510 1.02007 1.21968 0.96022 0.99884 0.99528 1.21139 0.83757 0.93912 0.99235 1.43979 1.00553 1.84525 1.02147 1.19201 1.02880 1.25623 0.90004 0.92817 1.25500 1.02013 0.95822 0.99462 1.70072 1.23710 1.23393 1.38945 0.85715 0.80089 0.77621 0.80201 1.19239 1.21813 1.22327 1.20910 0.98656 0.91708 0.85899 1.24092 0.96266 0.99510 0.93935 1.21378 0.95066 0.97764 1.02068 1.23813 0.95507 0.95753 0.86915 1.89537 1.77488 1.46527 1.19185 1.24114 0.92616 0.90718 0.95963 0.92861 0.91809 0.92530 0.95348 0.94756 0.92161 0.94312 0.94233 0.95466 0.91038 0.91542 0.92712 0.92491 0.92718 0.89891 0.87305 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.13 -5.08 6.25 30.59 0.19 -4.89 16 3 C 0.14 5.63 4.46 86.38 0.39 6.02 16 4 N -0.59 -27.35 2.02 -702.02 -1.42 -28.77 16 5 C -0.25 -12.78 9.49 84.03 0.80 -11.98 16 6 H 0.05 2.83 7.92 -2.91 -0.02 2.80 16 7 C -0.03 -1.66 4.97 84.86 0.42 -1.24 16 8 N -0.92 -51.75 11.28 21.65 0.24 -51.50 16 9 Si 0.93 43.78 29.61 68.60 2.03 45.81 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 13 C 0.15 6.82 4.82 86.38 0.42 7.24 16 14 C -0.14 -5.05 1.21 -51.48 -0.06 -5.12 16 15 C -0.11 -3.37 7.70 71.98 0.55 -2.81 16 16 C 0.06 2.30 8.37 72.30 0.61 2.91 16 17 O -0.41 -15.74 12.38 -148.98 -1.84 -17.59 16 18 C 0.04 1.43 8.37 72.30 0.60 2.04 16 19 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 2.06 6.48 -2.39 -0.02 2.04 16 25 H 0.04 1.49 8.06 -2.39 -0.02 1.47 16 26 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.03 1.15 8.07 -2.39 -0.02 1.13 16 28 H 0.07 3.71 5.14 -2.39 -0.01 3.69 16 29 H 0.07 1.86 7.74 -2.39 -0.02 1.84 16 30 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 31 H 0.06 1.96 6.74 -2.39 -0.02 1.94 16 32 H 0.05 2.50 7.99 -2.39 -0.02 2.48 16 33 H 0.08 3.25 8.10 -2.38 -0.02 3.23 16 34 H 0.11 2.94 8.10 -2.39 -0.02 2.92 16 35 H 0.07 2.46 8.10 -2.38 -0.02 2.44 16 Total: -1.00 -57.92 281.70 4.68 -53.24 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.03 Total: 9.77 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.63 Total: -10.97 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.17 Total: -80.27 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.84 Total: -17.59 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -57.92 4.68 -53.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.685 kcal (2) G-P(sol) polarization free energy of solvation -57.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds