Wall clock time and date at job start Mon Mar 30 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00208 * 2 1 4 4 H 1.09002 * 109.50521 * 30.07652 * 3 2 1 5 5 C 1.53122 * 109.50266 * 270.00211 * 3 2 1 6 6 C 1.53121 * 109.15914 * 182.36417 * 5 3 2 7 7 C 1.53028 * 109.28040 * 57.65686 * 6 5 3 8 8 H 1.09001 * 109.46782 * 60.83326 * 7 6 5 9 9 C 1.52997 * 109.45731 * 180.80808 * 7 6 5 10 10 N 1.46855 * 109.52389 * 300.81822 * 7 6 5 11 11 C 1.46899 * 111.00119 * 185.83910 * 10 7 6 12 12 C 1.50703 * 109.46866 * 168.35838 * 11 10 7 13 13 H 1.08001 * 119.99768 * 359.97438 * 12 11 10 14 14 C 1.37868 * 119.99777 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99967 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 120.00264 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46963 * 90.00144 * 16 14 12 18 18 H 1.48499 * 109.46833 * 210.00066 * 16 14 12 19 19 H 1.48499 * 109.46719 * 330.00085 * 16 14 12 20 20 C 1.46847 * 111.19321 * 61.74075 * 10 7 6 21 21 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47035 * 299.99848 * 1 2 3 23 23 H 1.09003 * 109.47225 * 59.99685 * 1 2 3 24 24 H 1.09002 * 109.52387 * 62.45739 * 5 3 2 25 25 H 1.08998 * 109.57889 * 302.30245 * 5 3 2 26 26 H 1.08996 * 109.50463 * 297.70858 * 6 5 3 27 27 H 1.09006 * 109.53168 * 177.61677 * 6 5 3 28 28 H 1.08999 * 109.47644 * 187.01400 * 9 7 6 29 29 H 1.08999 * 109.47360 * 307.02261 * 9 7 6 30 30 H 1.09005 * 109.46852 * 67.01679 * 9 7 6 31 31 H 1.08999 * 109.46883 * 288.35913 * 11 10 7 32 32 H 1.08999 * 109.47106 * 48.36146 * 11 10 7 33 33 H 0.97008 * 120.00065 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.46225 * 58.27907 * 20 10 7 35 35 H 1.09000 * 109.46227 * 178.24242 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3460 1.9996 0.5149 5 6 2.2181 1.7724 -1.4434 6 6 2.8950 3.1459 -1.4346 7 6 4.2206 3.0511 -0.6759 8 1 4.8756 2.3382 -1.1766 9 6 4.8909 4.4261 -0.6473 10 7 3.9680 2.6013 0.6991 11 6 5.2006 2.6312 1.4976 12 6 4.8604 2.4439 2.9537 13 1 3.8314 2.3159 3.2557 14 6 5.8627 2.4370 3.9004 15 7 5.5659 2.2731 5.1711 16 14 7.6425 2.6591 3.3781 17 1 7.9843 4.1042 3.3871 18 1 8.5297 1.9346 4.3231 19 1 7.8280 2.1151 2.0088 20 6 3.3615 1.2640 0.7172 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.2533 1.8450 -1.9453 25 1 2.8503 1.0582 -1.9709 26 1 2.2447 3.8689 -0.9423 27 1 3.0843 3.4654 -2.4594 28 1 5.8887 4.3352 -0.2181 29 1 4.9661 4.8149 -1.6628 30 1 4.2952 5.1081 -0.0404 31 1 5.8633 1.8289 1.1731 32 1 5.6986 3.5912 1.3614 33 1 6.2711 2.2686 5.8373 34 1 4.0205 0.5594 0.2098 35 1 3.2152 0.9455 1.7493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687208212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:58 Heat of formation + Delta-G solvation = -48.290157 kcal Electronic energy + Delta-G solvation = -15044.189042 eV Core-core repulsion = 12656.063436 eV Total energy + Delta-G solvation = -2388.125606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13668 -36.95608 -33.36470 -31.83282 -31.43089 -27.78754 -26.94655 -25.32399 -23.66340 -21.44951 -20.54170 -19.22600 -16.78920 -16.31658 -15.59954 -15.04328 -14.51679 -14.20930 -13.94400 -13.49385 -13.27204 -12.92869 -12.45334 -12.22620 -11.91863 -11.59400 -11.45456 -11.31106 -10.82821 -10.75318 -10.46232 -10.40092 -10.30701 -9.92983 -9.79710 -9.26088 -9.10858 -8.53357 -7.36207 -6.02817 -3.99545 3.29354 3.37005 3.39166 3.89418 4.43822 4.85327 5.06325 5.16767 5.22723 5.29345 5.37285 5.49818 5.56902 5.70795 5.76324 5.80100 5.92140 6.00174 6.01454 6.13023 6.23762 6.35539 6.40864 6.50940 6.64179 6.74036 6.91929 7.02588 7.45238 7.64711 7.93082 8.08833 8.68619 9.05902 9.58989 11.10379 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.009581 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.551670 B = 2921.746787 C = 3591.501024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.091 3.909 4 H 0.068 0.932 5 C -0.139 4.139 6 C -0.106 4.106 7 C 0.074 3.926 8 H 0.030 0.970 9 C -0.144 4.144 10 N -0.520 5.520 11 C 0.159 3.841 12 C -0.508 4.508 13 H 0.080 0.920 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.873 3.127 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.070 3.930 21 H 0.080 0.920 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.065 0.935 31 H -0.012 1.012 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.027 0.973 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 0.088 -13.015 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.086 0.914 5 C -0.177 4.177 6 C -0.144 4.144 7 C -0.035 4.035 8 H 0.048 0.952 9 C -0.202 4.202 10 N -0.246 5.246 11 C 0.034 3.966 12 C -0.546 4.546 13 H 0.098 0.902 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.058 4.058 21 H 0.099 0.901 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.005 0.995 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.206 0.227 -12.620 14.065 hybrid contribution 1.355 -0.255 -0.516 1.473 sum -4.851 -0.028 -13.136 14.003 Atomic orbital electron populations 1.22722 0.81724 1.02136 0.99720 1.87866 1.19120 1.28533 1.95038 1.22206 0.96021 0.83629 0.94865 0.91427 1.22066 1.00450 0.97581 0.97584 1.21560 0.96869 0.96641 0.99349 1.21620 0.95001 0.96371 0.90514 0.95213 1.21883 1.01005 0.96620 1.00681 1.61820 1.29522 1.24149 1.09109 1.20259 0.86494 0.95839 0.94056 1.21044 0.96019 1.48971 0.88568 0.90161 1.24889 0.98652 0.94967 0.94823 1.69898 1.32968 1.50691 1.00425 0.86896 0.85664 0.78611 0.78827 1.20133 1.21194 1.19265 1.21873 0.92266 0.90071 1.01621 0.90109 0.93987 0.94595 0.92428 0.91790 0.91149 0.91935 0.92384 0.93146 0.91551 0.99463 0.94810 0.92707 0.95448 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 101.05 1.09 1.51 16 2 O -0.39 -6.44 10.35 -35.23 -0.36 -6.81 16 3 C 0.09 1.54 2.77 -26.65 -0.07 1.46 16 4 H 0.07 1.15 7.79 -51.93 -0.40 0.74 16 5 C -0.14 -2.01 5.62 -26.61 -0.15 -2.16 16 6 C -0.11 -1.53 5.37 -26.65 -0.14 -1.67 16 7 C 0.07 1.28 2.44 -67.72 -0.17 1.12 16 8 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 9 C -0.14 -2.31 8.55 37.16 0.32 -1.99 16 10 N -0.52 -11.02 4.47 -228.13 -1.02 -12.04 16 11 C 0.16 3.90 3.54 -4.98 -0.02 3.88 16 12 C -0.51 -14.53 9.00 -34.44 -0.31 -14.84 16 13 H 0.08 2.50 7.48 -52.49 -0.39 2.11 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 16 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 20 C 0.07 1.43 4.95 -3.84 -0.02 1.41 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 23 H 0.04 0.39 7.94 -51.93 -0.41 -0.03 16 24 H 0.06 0.72 7.93 -51.93 -0.41 0.31 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.99 6.50 -51.93 -0.34 0.65 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H -0.01 -0.31 7.17 -51.93 -0.37 -0.68 16 32 H 0.03 0.81 5.16 -51.93 -0.27 0.55 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 2.18 6.82 -51.93 -0.35 1.83 16 LS Contribution 273.85 15.07 4.13 4.13 Total: -1.00 -30.63 273.85 -6.64 -37.27 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.92 Total: -3.13 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 0.44 Total: -9.38 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.25 Total: -39.04 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.36 Total: -6.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.63 -6.64 -37.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.024 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds