Wall clock time and date at job start Mon Mar 30 2020 04:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00208 * 2 1 4 4 H 1.09002 * 109.50521 * 30.07652 * 3 2 1 5 5 C 1.53122 * 109.50266 * 270.00211 * 3 2 1 6 6 C 1.53121 * 109.15914 * 182.36417 * 5 3 2 7 7 C 1.53028 * 109.28040 * 57.65686 * 6 5 3 8 8 H 1.09001 * 109.46782 * 60.83326 * 7 6 5 9 9 C 1.52997 * 109.45731 * 180.80808 * 7 6 5 10 10 N 1.46855 * 109.52389 * 300.81822 * 7 6 5 11 11 C 1.46899 * 111.00119 * 185.83910 * 10 7 6 12 12 C 1.50703 * 109.46866 * 168.35838 * 11 10 7 13 13 H 1.08001 * 119.99768 * 359.97438 * 12 11 10 14 14 C 1.37868 * 119.99777 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99967 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 120.00264 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46963 * 90.00144 * 16 14 12 18 18 H 1.48499 * 109.46833 * 210.00066 * 16 14 12 19 19 H 1.48499 * 109.46719 * 330.00085 * 16 14 12 20 20 C 1.46847 * 111.19321 * 61.74075 * 10 7 6 21 21 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47035 * 299.99848 * 1 2 3 23 23 H 1.09003 * 109.47225 * 59.99685 * 1 2 3 24 24 H 1.09002 * 109.52387 * 62.45739 * 5 3 2 25 25 H 1.08998 * 109.57889 * 302.30245 * 5 3 2 26 26 H 1.08996 * 109.50463 * 297.70858 * 6 5 3 27 27 H 1.09006 * 109.53168 * 177.61677 * 6 5 3 28 28 H 1.08999 * 109.47644 * 187.01400 * 9 7 6 29 29 H 1.08999 * 109.47360 * 307.02261 * 9 7 6 30 30 H 1.09005 * 109.46852 * 67.01679 * 9 7 6 31 31 H 1.08999 * 109.46883 * 288.35913 * 11 10 7 32 32 H 1.08999 * 109.47106 * 48.36146 * 11 10 7 33 33 H 0.97008 * 120.00065 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.46225 * 58.27907 * 20 10 7 35 35 H 1.09000 * 109.46227 * 178.24242 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3460 1.9996 0.5149 5 6 2.2181 1.7724 -1.4434 6 6 2.8950 3.1459 -1.4346 7 6 4.2206 3.0511 -0.6759 8 1 4.8756 2.3382 -1.1766 9 6 4.8909 4.4261 -0.6473 10 7 3.9680 2.6013 0.6991 11 6 5.2006 2.6312 1.4976 12 6 4.8604 2.4439 2.9537 13 1 3.8314 2.3159 3.2557 14 6 5.8627 2.4370 3.9004 15 7 5.5659 2.2731 5.1711 16 14 7.6425 2.6591 3.3781 17 1 7.9843 4.1042 3.3871 18 1 8.5297 1.9346 4.3231 19 1 7.8280 2.1151 2.0088 20 6 3.3615 1.2640 0.7172 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.2533 1.8450 -1.9453 25 1 2.8503 1.0582 -1.9709 26 1 2.2447 3.8689 -0.9423 27 1 3.0843 3.4654 -2.4594 28 1 5.8887 4.3352 -0.2181 29 1 4.9661 4.8149 -1.6628 30 1 4.2952 5.1081 -0.0404 31 1 5.8633 1.8289 1.1731 32 1 5.6986 3.5912 1.3614 33 1 6.2711 2.2686 5.8373 34 1 4.0205 0.5594 0.2098 35 1 3.2152 0.9455 1.7493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687208212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:57 Heat of formation + Delta-G solvation = -70.347648 kcal Electronic energy + Delta-G solvation = -15045.145527 eV Core-core repulsion = 12656.063436 eV Total energy + Delta-G solvation = -2389.082091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54380 -38.30662 -35.23161 -33.64252 -32.81010 -29.61790 -28.23571 -26.56937 -25.29289 -23.10274 -22.03846 -20.67413 -18.94257 -17.64852 -16.98924 -16.51205 -16.15834 -15.72947 -15.46661 -14.87030 -14.64467 -14.63224 -14.21055 -13.63043 -13.44919 -12.98466 -12.78452 -12.71392 -12.49741 -12.38705 -11.95001 -11.84541 -11.78010 -11.68234 -11.34792 -11.22507 -10.75996 -10.40277 -9.06575 -8.28978 -6.31895 1.32765 1.34946 1.45468 2.33352 2.59853 3.04448 3.41774 3.80811 3.88202 3.98239 4.14694 4.31736 4.43846 4.54449 4.56467 4.63429 4.66341 4.71648 4.83110 4.86566 4.95696 4.99228 5.01129 5.07220 5.13747 5.23851 5.30820 5.43146 5.57437 5.99547 6.21648 6.39930 6.67047 6.73878 7.31089 8.87862 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.009581 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.551670 B = 2921.746787 C = 3591.501024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.098 3.902 4 H 0.063 0.937 5 C -0.131 4.131 6 C -0.099 4.099 7 C 0.066 3.934 8 H 0.029 0.971 9 C -0.142 4.142 10 N -0.532 5.532 11 C 0.170 3.830 12 C -0.516 4.516 13 H 0.035 0.965 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.946 3.054 17 H -0.259 1.259 18 H -0.281 1.281 19 H -0.254 1.254 20 C 0.073 3.927 21 H 0.100 0.900 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.057 0.943 31 H -0.020 1.020 32 H 0.045 0.955 33 H 0.267 0.733 34 H 0.019 0.981 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 0.909 -15.891 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.040 3.960 4 H 0.081 0.919 5 C -0.169 4.169 6 C -0.137 4.137 7 C -0.042 4.042 8 H 0.047 0.953 9 C -0.199 4.199 10 N -0.258 5.258 11 C 0.043 3.957 12 C -0.554 4.554 13 H 0.053 0.947 14 C -0.190 4.190 15 N -0.589 5.589 16 Si 0.769 3.231 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.178 1.178 20 C -0.056 4.056 21 H 0.118 0.882 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.076 0.924 31 H -0.003 1.003 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.933 1.052 -15.521 16.649 hybrid contribution 1.134 -0.562 0.419 1.333 sum -4.799 0.490 -15.102 15.854 Atomic orbital electron populations 1.22972 0.79386 1.03827 1.00732 1.87824 1.21667 1.28296 1.95269 1.22044 0.93600 0.83978 0.96387 0.91933 1.22018 1.02047 0.97469 0.95352 1.21565 0.94827 0.96575 1.00740 1.21871 0.97261 0.96922 0.88171 0.95279 1.21880 0.99693 0.95554 1.02806 1.61758 1.27950 1.24385 1.11724 1.20014 0.87935 0.95792 0.91954 1.21270 0.94139 1.48716 0.91320 0.94707 1.25853 1.04018 0.94517 0.94630 1.70058 1.34808 1.52143 1.01894 0.85734 0.78967 0.79439 0.78964 1.18413 1.20692 1.17797 1.21767 0.94625 0.89692 0.99514 0.88194 0.94180 0.92315 0.89515 0.91827 0.91125 0.88326 0.93791 0.89348 0.92403 1.00283 0.93696 0.92431 0.96268 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.82 113.37 1.23 1.84 16 2 O -0.41 -13.45 10.35 -148.98 -1.54 -14.99 16 3 C 0.10 3.27 2.77 30.65 0.08 3.35 16 4 H 0.06 2.12 7.79 -2.39 -0.02 2.10 16 5 C -0.13 -3.40 5.62 30.68 0.17 -3.23 16 6 C -0.10 -2.50 5.37 30.64 0.16 -2.34 16 7 C 0.07 2.15 2.44 44.93 0.11 2.26 16 8 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 9 C -0.14 -4.14 8.55 71.98 0.62 -3.53 16 10 N -0.53 -22.72 4.47 -875.66 -3.91 -26.64 16 11 C 0.17 8.40 3.54 85.56 0.30 8.71 16 12 C -0.52 -30.81 9.00 25.60 0.23 -30.58 16 13 H 0.03 2.33 7.48 -2.91 -0.02 2.30 16 14 C 0.01 0.41 5.47 84.65 0.46 0.88 16 15 N -0.95 -60.51 13.96 21.44 0.30 -60.21 16 16 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 20 C 0.07 3.07 4.95 86.32 0.43 3.50 16 21 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.04 0.93 8.09 -2.39 -0.02 0.91 16 23 H 0.06 1.09 7.94 -2.39 -0.02 1.07 16 24 H 0.09 1.80 7.93 -2.39 -0.02 1.78 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.04 1.39 6.50 -2.39 -0.02 1.37 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H -0.02 -1.04 7.17 -2.39 -0.02 -1.05 16 32 H 0.05 2.13 5.16 -2.39 -0.01 2.12 16 33 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 2.51 6.82 -2.39 -0.02 2.49 16 Total: -1.00 -69.04 273.85 1.50 -67.54 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.98 Total: 6.70 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 3.80 Total: -19.14 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -3.62 Total: -86.85 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.54 Total: -14.99 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -69.04 1.50 -67.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.811 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds