Wall clock time and date at job start Mon Mar 30 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99860 * 2 1 4 4 H 1.09005 * 109.53560 * 30.10681 * 3 2 1 5 5 C 1.53115 * 109.50594 * 270.00346 * 3 2 1 6 6 C 1.53115 * 109.16149 * 297.71380 * 5 3 2 7 7 C 1.53036 * 109.27944 * 302.34844 * 6 5 3 8 8 H 1.08998 * 109.46187 * 299.15866 * 7 6 5 9 9 C 1.53005 * 109.46404 * 179.18293 * 7 6 5 10 10 N 1.46844 * 109.52546 * 59.17898 * 7 6 5 11 11 C 1.46903 * 111.00133 * 174.16494 * 10 7 6 12 12 C 1.50696 * 109.47503 * 64.37511 * 11 10 7 13 13 H 1.08004 * 119.99739 * 359.18625 * 12 11 10 14 14 C 1.37874 * 120.00297 * 179.18374 * 12 11 10 15 15 N 1.31516 * 120.00039 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99855 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47339 * 89.99425 * 16 14 12 18 18 H 1.48499 * 109.46853 * 210.00041 * 16 14 12 19 19 H 1.48499 * 109.46929 * 329.99614 * 16 14 12 20 20 C 1.46848 * 111.19809 * 298.25531 * 10 7 6 21 21 H 1.09008 * 109.47012 * 299.99403 * 1 2 3 22 22 H 1.08996 * 109.47504 * 59.99654 * 1 2 3 23 23 H 1.08999 * 109.47265 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.52317 * 177.81093 * 5 3 2 25 25 H 1.08996 * 109.52346 * 57.62329 * 5 3 2 26 26 H 1.09004 * 109.50215 * 62.28761 * 6 5 3 27 27 H 1.08998 * 109.50477 * 182.40313 * 6 5 3 28 28 H 1.08999 * 109.46709 * 53.35843 * 9 7 6 29 29 H 1.08995 * 109.46955 * 173.35780 * 9 7 6 30 30 H 1.08989 * 109.47033 * 293.36151 * 9 7 6 31 31 H 1.08997 * 109.46964 * 184.37786 * 11 10 7 32 32 H 1.08999 * 109.46640 * 304.37379 * 11 10 7 33 33 H 0.97003 * 119.99480 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.46912 * 181.75365 * 20 10 7 35 35 H 1.09001 * 109.46351 * 301.74102 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3466 1.9999 0.5153 5 6 2.2181 1.7726 -1.4433 6 6 3.1981 0.8259 -2.1417 7 6 4.5151 0.7974 -1.3626 8 1 4.9461 1.7983 -1.3411 9 6 5.4907 -0.1632 -2.0457 10 7 4.2630 0.3435 0.0110 11 6 5.5221 0.1713 0.7479 12 6 6.2056 1.5064 0.8937 13 1 5.7566 2.3921 0.4689 14 6 7.4039 1.5973 1.5695 15 7 8.0006 2.7624 1.6963 16 14 8.1806 0.0653 2.3038 17 1 9.0781 -0.5636 1.3017 18 1 8.9663 0.4372 3.5078 19 1 7.1147 -0.8956 2.6857 20 6 3.3617 1.2630 0.7170 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 2.6253 2.7837 -1.4438 25 1 1.2640 1.7629 -1.9702 26 1 2.7735 -0.1774 -2.1754 27 1 3.3832 1.1777 -3.1566 28 1 5.5876 0.1047 -3.0978 29 1 6.4653 -0.0957 -1.5623 30 1 5.1142 -1.1827 -1.9635 31 1 5.3117 -0.2390 1.7356 32 1 6.1722 -0.5120 0.2016 33 1 8.8438 2.8263 2.1715 34 1 3.2189 0.9171 1.7408 35 1 3.7980 2.2618 0.7286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687208218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:02 Heat of formation + Delta-G solvation = -68.887496 kcal Electronic energy + Delta-G solvation = -15317.785377 eV Core-core repulsion = 12928.766603 eV Total energy + Delta-G solvation = -2389.018774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55069 -38.02552 -35.07458 -33.53917 -32.73824 -29.39605 -27.93290 -26.83626 -25.27744 -23.26535 -21.89742 -20.49609 -18.79905 -17.28903 -17.01630 -16.34659 -16.11590 -15.90648 -15.29871 -15.02920 -14.56204 -14.13509 -14.00797 -13.50487 -13.22937 -12.99077 -12.74792 -12.72746 -12.36599 -12.29973 -12.06740 -11.92309 -11.74338 -11.54084 -11.43278 -10.93276 -10.74519 -10.29674 -8.85500 -8.31363 -6.35150 1.34163 1.35798 1.48199 2.33691 2.96434 3.04745 3.36738 3.88733 3.93452 4.14702 4.28996 4.37837 4.56196 4.63056 4.68344 4.73657 4.77776 4.83479 4.91553 4.98899 5.00266 5.05122 5.10750 5.13251 5.19993 5.32029 5.38700 5.48781 5.62301 6.14521 6.36701 6.45607 6.62683 6.71662 7.31950 8.84876 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039239 B = 0.009291 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.410940 B = 3013.059745 C = 3174.917236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.387 6.387 3 C 0.099 3.901 4 H 0.076 0.924 5 C -0.138 4.138 6 C -0.096 4.096 7 C 0.083 3.917 8 H 0.010 0.990 9 C -0.135 4.135 10 N -0.517 5.517 11 C 0.157 3.843 12 C -0.542 4.542 13 H 0.035 0.965 14 C 0.012 3.988 15 N -0.948 5.948 16 Si 0.944 3.056 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.249 1.249 20 C 0.066 3.934 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.059 0.941 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -5.338 -5.859 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.306 6.306 3 C 0.041 3.959 4 H 0.093 0.907 5 C -0.176 4.176 6 C -0.134 4.134 7 C -0.026 4.026 8 H 0.028 0.972 9 C -0.193 4.193 10 N -0.241 5.241 11 C 0.030 3.970 12 C -0.581 4.581 13 H 0.053 0.947 14 C -0.186 4.186 15 N -0.588 5.588 16 Si 0.767 3.233 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.173 1.173 20 C -0.063 4.063 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.070 -5.890 -5.822 15.473 hybrid contribution 1.138 1.029 0.726 1.698 sum -11.932 -4.861 -5.095 13.855 Atomic orbital electron populations 1.22956 0.80627 1.03390 1.00409 1.88055 1.20206 1.27292 1.95014 1.22156 0.93104 0.84984 0.95705 0.90660 1.22042 1.00555 0.98954 0.96061 1.21472 0.93546 1.00507 0.97890 1.21516 0.95974 0.96003 0.89114 0.97208 1.21759 0.98162 0.99528 0.99836 1.62389 1.13260 1.46379 1.02035 1.20098 0.88387 0.94630 0.93912 1.21874 1.06356 0.95008 1.34875 0.94721 1.25867 0.97496 0.99086 0.96130 1.70077 1.18315 1.26384 1.44053 0.85751 0.79129 0.79987 0.78385 1.19072 1.20935 1.17280 1.21980 0.92117 0.94792 0.97387 0.93716 0.93194 0.88893 0.91992 0.89536 0.90990 0.90544 0.90978 0.94428 0.91815 0.96076 0.94698 0.92587 0.92229 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.82 113.37 1.23 1.70 16 2 O -0.39 -11.98 9.68 -148.98 -1.44 -13.42 16 3 C 0.10 3.08 2.94 30.65 0.09 3.17 16 4 H 0.08 2.01 7.79 -2.38 -0.02 2.00 16 5 C -0.14 -3.90 5.70 30.67 0.17 -3.73 16 6 C -0.10 -2.96 5.22 30.64 0.16 -2.80 16 7 C 0.08 3.26 2.09 44.94 0.09 3.35 16 8 H 0.01 0.46 6.91 -2.39 -0.02 0.44 16 9 C -0.14 -4.90 8.53 71.98 0.61 -4.29 16 10 N -0.52 -22.44 4.58 -875.63 -4.01 -26.45 16 11 C 0.16 7.78 3.78 85.56 0.32 8.10 16 12 C -0.54 -31.21 8.28 25.60 0.21 -31.00 16 13 H 0.03 2.22 6.08 -2.91 -0.02 2.20 16 14 C 0.01 0.71 5.47 84.65 0.46 1.17 16 15 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 16 Si 0.94 44.82 27.48 68.60 1.89 46.71 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 20 C 0.07 2.69 4.73 86.33 0.41 3.10 16 21 H 0.04 0.84 8.09 -2.38 -0.02 0.82 16 22 H 0.05 0.88 7.83 -2.39 -0.02 0.86 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.09 1.94 7.83 -2.39 -0.02 1.92 16 26 H 0.07 2.23 7.80 -2.38 -0.02 2.21 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.54 6.63 -2.39 -0.02 1.52 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.02 1.07 7.14 -2.39 -0.02 1.05 16 32 H 0.04 1.70 5.57 -2.39 -0.01 1.69 16 33 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.06 2.48 8.12 -2.39 -0.02 2.46 16 35 H 0.03 1.24 6.67 -2.39 -0.02 1.23 16 Total: -1.00 -66.64 269.50 1.49 -65.15 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.99 Total: 8.50 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.77 Total: -21.23 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.71 Total: -85.70 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.44 Total: -13.42 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.89 Total: 46.71 kcal Total: -66.64 1.49 -65.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.739 kcal (2) G-P(sol) polarization free energy of solvation -66.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds