Wall clock time and date at job start Mon Mar 30 2020 04:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00326 * 2 1 4 4 H 1.08999 * 109.50012 * 330.07436 * 3 2 1 5 5 C 1.53121 * 109.53677 * 90.17253 * 3 2 1 6 6 C 1.53115 * 109.16143 * 62.30892 * 5 3 2 7 7 C 1.53042 * 109.27731 * 57.65421 * 6 5 3 8 8 H 1.08998 * 109.46335 * 60.83524 * 7 6 5 9 9 C 1.52999 * 109.46256 * 180.80855 * 7 6 5 10 10 N 1.46854 * 109.52164 * 300.82209 * 7 6 5 11 11 C 1.46899 * 110.99562 * 185.84113 * 10 7 6 12 12 C 1.50703 * 109.47180 * 301.83318 * 11 10 7 13 13 H 1.07994 * 119.99603 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.46843 * 111.19879 * 61.74125 * 10 7 6 21 21 H 1.08996 * 109.47234 * 300.00461 * 1 2 3 22 22 H 1.09008 * 109.46827 * 60.00565 * 1 2 3 23 23 H 1.09003 * 109.47234 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.52160 * 182.21751 * 5 3 2 25 25 H 1.09000 * 109.52498 * 302.33933 * 5 3 2 26 26 H 1.08996 * 109.50451 * 177.59094 * 6 5 3 27 27 H 1.09000 * 109.50399 * 297.67943 * 6 5 3 28 28 H 1.08996 * 109.47031 * 180.02562 * 9 7 6 29 29 H 1.09005 * 109.47041 * 300.04949 * 9 7 6 30 30 H 1.08998 * 109.47253 * 60.04938 * 9 7 6 31 31 H 1.09005 * 109.47198 * 181.83515 * 11 10 7 32 32 H 1.08998 * 109.47329 * 61.83462 * 11 10 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.09004 * 109.45880 * 58.27348 * 20 10 7 35 35 H 1.09002 * 109.46185 * 178.24864 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3448 2.0001 -0.5126 5 6 2.2225 1.7714 1.4430 6 6 3.2051 0.8245 2.1376 7 6 4.5196 0.7971 1.3544 8 1 4.9502 1.7981 1.3323 9 6 5.4977 -0.1636 2.0336 10 7 4.2633 0.3443 -0.0189 11 6 5.5201 0.1730 -0.7599 12 6 6.2760 1.4766 -0.7751 13 1 5.8641 2.3453 -0.2831 14 6 7.4933 1.5602 -1.4171 15 7 7.9950 0.5022 -2.0157 16 14 8.4305 3.1759 -1.4353 17 1 7.6568 4.2055 -0.6958 18 1 8.6268 3.6185 -2.8392 19 1 9.7528 2.9886 -0.7859 20 6 3.3593 1.2640 -0.7212 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 2.6293 2.7827 1.4431 25 1 1.2699 1.7621 1.9728 26 1 3.3933 1.1756 3.1522 27 1 2.7806 -0.1788 2.1724 28 1 6.4342 -0.1829 1.4762 29 1 5.6881 0.1724 3.0530 30 1 5.0676 -1.1648 2.0554 31 1 5.3000 -0.1313 -1.7832 32 1 6.1260 -0.5927 -0.2755 33 1 7.5085 -0.3369 -2.0059 34 1 3.7954 2.2630 -0.7335 35 1 3.2134 0.9188 -1.7448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687208220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:05 Heat of formation + Delta-G solvation = -54.412145 kcal Electronic energy + Delta-G solvation = -15331.211424 eV Core-core repulsion = 12942.820349 eV Total energy + Delta-G solvation = -2388.391075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.11255 -36.65402 -33.45891 -31.56216 -31.27759 -27.08154 -26.10529 -25.52106 -23.58312 -21.88988 -20.57434 -19.01575 -16.69071 -15.77683 -15.70053 -14.99415 -14.41547 -13.97679 -13.71179 -13.65280 -13.05553 -12.69476 -12.28592 -11.90340 -11.53636 -11.32551 -11.06710 -11.00667 -10.97054 -10.67970 -10.53396 -10.18613 -10.06891 -10.02810 -9.45061 -9.17854 -9.00729 -8.33380 -6.96900 -6.34185 -4.08354 3.41536 3.44911 3.57546 4.12867 4.52305 4.97611 5.14759 5.19875 5.38436 5.41709 5.47797 5.51087 5.68615 5.77077 5.84545 5.98880 6.17942 6.23163 6.27057 6.31437 6.44625 6.56665 6.61071 6.66369 6.98836 7.04555 7.17417 7.35846 7.58127 7.98167 8.19403 8.33054 8.57787 8.83909 9.65148 11.02181 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039925 B = 0.008932 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.142415 B = 3133.983892 C = 3253.097319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.091 3.909 4 H 0.053 0.947 5 C -0.140 4.140 6 C -0.106 4.106 7 C 0.091 3.909 8 H 0.043 0.957 9 C -0.139 4.139 10 N -0.521 5.521 11 C 0.173 3.827 12 C -0.625 4.625 13 H 0.050 0.950 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 1.069 2.931 17 H -0.291 1.291 18 H -0.287 1.287 19 H -0.287 1.287 20 C 0.070 3.930 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.017 0.983 32 H 0.028 0.972 33 H 0.270 0.730 34 H 0.049 0.951 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 1.977 6.042 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.033 3.967 4 H 0.071 0.929 5 C -0.177 4.177 6 C -0.144 4.144 7 C -0.018 4.018 8 H 0.060 0.940 9 C -0.196 4.196 10 N -0.245 5.245 11 C 0.047 3.953 12 C -0.664 4.664 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.547 5.547 16 Si 0.898 3.102 17 H -0.218 1.218 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.059 4.059 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.488 2.065 5.530 12.035 hybrid contribution -1.236 0.426 0.468 1.389 sum -11.724 2.490 5.999 13.403 Atomic orbital electron populations 1.22733 0.83105 1.02003 0.99051 1.88122 1.17505 1.27449 1.94795 1.22311 0.95010 0.84193 0.95161 0.92902 1.22034 0.99420 0.99545 0.96745 1.21552 0.95629 0.99907 0.97299 1.21353 0.93342 0.97563 0.89554 0.93956 1.21780 1.00293 0.98820 0.98728 1.62320 1.15335 1.45471 1.01344 1.19892 0.85985 0.96562 0.92900 1.22599 1.07490 0.97610 1.38741 0.93179 1.25720 0.95719 1.03704 0.93255 1.70719 1.40910 1.01866 1.41209 0.83549 0.75742 0.74527 0.76395 1.21754 1.21385 1.21325 1.21933 0.90322 0.96480 0.97193 0.94889 0.94760 0.90237 0.91694 0.92665 0.92861 0.91177 0.91160 0.93904 0.93195 0.96492 0.95436 0.91899 0.93273 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.44 16 2 O -0.36 -6.18 9.68 -35.23 -0.34 -6.52 16 3 C 0.09 1.52 2.94 -26.65 -0.08 1.44 16 4 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 5 C -0.14 -2.15 5.70 -26.61 -0.15 -2.30 16 6 C -0.11 -1.79 5.22 -26.65 -0.14 -1.93 16 7 C 0.09 1.85 1.99 -67.72 -0.13 1.71 16 8 H 0.04 0.95 6.57 -51.93 -0.34 0.61 16 9 C -0.14 -2.73 8.76 37.16 0.33 -2.40 16 10 N -0.52 -11.67 4.58 -228.12 -1.04 -12.72 16 11 C 0.17 4.49 3.89 -4.98 -0.02 4.47 16 12 C -0.63 -17.31 7.59 -34.44 -0.26 -17.58 16 13 H 0.05 1.40 5.84 -52.49 -0.31 1.09 16 14 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 15 N -0.91 -27.63 13.65 55.43 0.76 -26.87 16 16 Si 1.07 25.39 29.90 -169.99 -5.08 20.31 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.07 1.42 4.82 -3.84 -0.02 1.40 16 21 H 0.03 0.36 7.85 -51.93 -0.41 -0.04 16 22 H 0.03 0.38 8.09 -51.92 -0.42 -0.04 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.24 7.80 -51.93 -0.41 0.83 16 28 H 0.07 1.58 6.24 -51.93 -0.32 1.25 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.02 0.47 7.93 -51.93 -0.41 0.06 16 32 H 0.03 0.75 6.19 -51.93 -0.32 0.43 16 33 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 34 H 0.05 1.06 7.03 -51.93 -0.37 0.69 16 35 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 LS Contribution 271.50 15.07 4.09 4.09 Total: -1.00 -30.23 271.50 -6.84 -37.07 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.74 Total: -2.12 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 0.52 Total: -13.23 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.29 Total: -39.59 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.34 Total: -6.52 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.23 -6.84 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.346 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds