Wall clock time and date at job start Mon Mar 30 2020 04:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00326 * 2 1 4 4 H 1.08999 * 109.50012 * 330.07436 * 3 2 1 5 5 C 1.53121 * 109.53677 * 90.17253 * 3 2 1 6 6 C 1.53115 * 109.16143 * 62.30892 * 5 3 2 7 7 C 1.53042 * 109.27731 * 57.65421 * 6 5 3 8 8 H 1.08998 * 109.46335 * 60.83524 * 7 6 5 9 9 C 1.52999 * 109.46256 * 180.80855 * 7 6 5 10 10 N 1.46854 * 109.52164 * 300.82209 * 7 6 5 11 11 C 1.46899 * 110.99562 * 185.84113 * 10 7 6 12 12 C 1.50703 * 109.47180 * 301.83318 * 11 10 7 13 13 H 1.07994 * 119.99603 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.46843 * 111.19879 * 61.74125 * 10 7 6 21 21 H 1.08996 * 109.47234 * 300.00461 * 1 2 3 22 22 H 1.09008 * 109.46827 * 60.00565 * 1 2 3 23 23 H 1.09003 * 109.47234 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.52160 * 182.21751 * 5 3 2 25 25 H 1.09000 * 109.52498 * 302.33933 * 5 3 2 26 26 H 1.08996 * 109.50451 * 177.59094 * 6 5 3 27 27 H 1.09000 * 109.50399 * 297.67943 * 6 5 3 28 28 H 1.08996 * 109.47031 * 180.02562 * 9 7 6 29 29 H 1.09005 * 109.47041 * 300.04949 * 9 7 6 30 30 H 1.08998 * 109.47253 * 60.04938 * 9 7 6 31 31 H 1.09005 * 109.47198 * 181.83515 * 11 10 7 32 32 H 1.08998 * 109.47329 * 61.83462 * 11 10 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.09004 * 109.45880 * 58.27348 * 20 10 7 35 35 H 1.09002 * 109.46185 * 178.24864 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3448 2.0001 -0.5126 5 6 2.2225 1.7714 1.4430 6 6 3.2051 0.8245 2.1376 7 6 4.5196 0.7971 1.3544 8 1 4.9502 1.7981 1.3323 9 6 5.4977 -0.1636 2.0336 10 7 4.2633 0.3443 -0.0189 11 6 5.5201 0.1730 -0.7599 12 6 6.2760 1.4766 -0.7751 13 1 5.8641 2.3453 -0.2831 14 6 7.4933 1.5602 -1.4171 15 7 7.9950 0.5022 -2.0157 16 14 8.4305 3.1759 -1.4353 17 1 7.6568 4.2055 -0.6958 18 1 8.6268 3.6185 -2.8392 19 1 9.7528 2.9886 -0.7859 20 6 3.3593 1.2640 -0.7212 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 2.6293 2.7827 1.4431 25 1 1.2699 1.7621 1.9728 26 1 3.3933 1.1756 3.1522 27 1 2.7806 -0.1788 2.1724 28 1 6.4342 -0.1829 1.4762 29 1 5.6881 0.1724 3.0530 30 1 5.0676 -1.1648 2.0554 31 1 5.3000 -0.1313 -1.7832 32 1 6.1260 -0.5927 -0.2755 33 1 7.5085 -0.3369 -2.0059 34 1 3.7954 2.2630 -0.7335 35 1 3.2134 0.9188 -1.7448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687208220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:04 Heat of formation + Delta-G solvation = -75.325107 kcal Electronic energy + Delta-G solvation = -15332.118278 eV Core-core repulsion = 12942.820349 eV Total energy + Delta-G solvation = -2389.297929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60283 -38.10680 -35.39183 -33.32617 -32.78333 -28.66017 -27.71585 -26.87828 -25.51334 -23.59846 -22.10038 -20.63121 -18.68248 -17.23847 -17.11054 -16.23899 -16.09849 -15.69577 -15.56210 -15.08866 -14.64199 -14.05642 -13.90741 -13.58740 -13.08913 -12.91973 -12.79001 -12.75901 -12.41453 -12.38843 -12.02875 -11.97733 -11.64619 -11.52110 -11.21883 -10.95351 -10.55237 -10.33740 -8.92222 -8.57760 -6.39769 1.48147 1.57322 1.72530 2.52807 2.92805 3.14975 3.32467 3.84633 3.88928 4.10685 4.23749 4.33148 4.51665 4.58619 4.62642 4.68692 4.73367 4.77261 4.86675 4.93050 4.94379 4.99491 5.07095 5.09836 5.15630 5.28790 5.38292 5.50862 5.87380 6.01224 6.37253 6.50764 6.51460 6.62187 7.43150 8.70901 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039925 B = 0.008932 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.142415 B = 3133.983892 C = 3253.097319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.098 3.902 4 H 0.079 0.921 5 C -0.136 4.136 6 C -0.098 4.098 7 C 0.087 3.913 8 H 0.020 0.980 9 C -0.133 4.133 10 N -0.524 5.524 11 C 0.185 3.815 12 C -0.622 4.622 13 H 0.048 0.952 14 C -0.032 4.032 15 N -0.936 5.936 16 Si 1.117 2.883 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.067 3.933 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.053 0.947 31 H -0.012 1.012 32 H 0.008 0.992 33 H 0.256 0.744 34 H 0.034 0.966 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.404 3.405 7.553 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.310 6.310 3 C 0.040 3.960 4 H 0.097 0.903 5 C -0.174 4.174 6 C -0.135 4.135 7 C -0.022 4.022 8 H 0.038 0.962 9 C -0.191 4.191 10 N -0.248 5.248 11 C 0.058 3.942 12 C -0.661 4.661 13 H 0.066 0.934 14 C -0.231 4.231 15 N -0.573 5.573 16 Si 0.939 3.061 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.062 4.062 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.006 0.994 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.167 3.485 7.055 14.490 hybrid contribution -0.802 -0.087 -0.001 0.807 sum -12.970 3.398 7.054 15.150 Atomic orbital electron populations 1.22957 0.80524 1.03341 1.00532 1.88066 1.20343 1.27601 1.95036 1.22188 0.92953 0.84946 0.95921 0.90281 1.22037 1.00504 0.99102 0.95744 1.21484 0.93589 1.00377 0.98088 1.21491 0.95747 0.96172 0.88748 0.96185 1.21723 0.98324 0.99243 0.99766 1.62304 1.13481 1.46761 1.02285 1.19581 0.87595 0.95462 0.91608 1.22781 1.07483 0.97949 1.37872 0.93375 1.27230 0.97122 1.06156 0.92546 1.70852 1.41285 1.02043 1.43109 0.82926 0.75031 0.71022 0.77085 1.19828 1.20530 1.20436 1.21982 0.92388 0.94817 0.97018 0.92953 0.93608 0.89127 0.91231 0.89459 0.90227 0.91669 0.94933 0.90884 0.92779 0.99393 0.97368 0.93467 0.94808 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.82 113.37 1.23 1.72 16 2 O -0.39 -12.58 9.68 -148.98 -1.44 -14.03 16 3 C 0.10 3.05 2.94 30.65 0.09 3.14 16 4 H 0.08 2.04 7.79 -2.39 -0.02 2.03 16 5 C -0.14 -3.72 5.70 30.67 0.17 -3.54 16 6 C -0.10 -3.03 5.22 30.65 0.16 -2.87 16 7 C 0.09 3.50 1.99 44.94 0.09 3.59 16 8 H 0.02 0.90 6.57 -2.39 -0.02 0.88 16 9 C -0.13 -5.21 8.76 71.98 0.63 -4.58 16 10 N -0.52 -23.94 4.58 -875.63 -4.01 -27.95 16 11 C 0.18 10.06 3.89 85.56 0.33 10.39 16 12 C -0.62 -35.34 7.59 25.60 0.19 -35.15 16 13 H 0.05 2.72 5.84 -2.91 -0.02 2.70 16 14 C -0.03 -1.86 5.46 84.65 0.46 -1.40 16 15 N -0.94 -58.42 13.65 21.45 0.29 -58.13 16 16 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 C 0.07 2.74 4.82 86.33 0.42 3.15 16 21 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 22 H 0.05 0.88 8.09 -2.38 -0.02 0.86 16 23 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 1.89 7.85 -2.39 -0.02 1.87 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.12 7.80 -2.39 -0.02 2.10 16 28 H 0.03 1.49 6.24 -2.39 -0.01 1.47 16 29 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H -0.01 -0.71 7.93 -2.38 -0.02 -0.73 16 32 H 0.01 0.48 6.19 -2.39 -0.01 0.47 16 33 H 0.26 16.30 7.22 -92.71 -0.67 15.63 16 34 H 0.03 1.47 7.03 -2.38 -0.02 1.45 16 35 H 0.05 2.19 8.06 -2.39 -0.02 2.17 16 Total: -1.00 -66.75 271.50 1.81 -64.94 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.14 Total: 7.64 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.78 Total: -25.56 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -3.71 Total: -86.08 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.44 Total: -14.03 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -66.75 1.81 -64.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.385 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds