Wall clock time and date at job start Mon Mar 30 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46852 * 2 1 4 4 O 1.42905 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.42893 * 114.00037 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47126 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47232 * 65.00276 * 6 5 4 8 8 C 1.36939 * 120.00094 * 269.99794 * 7 6 5 9 9 H 1.08002 * 119.99838 * 141.33817 * 8 7 6 10 10 C 1.38810 * 119.99768 * 321.34751 * 8 7 6 11 11 N 1.31624 * 119.99814 * 157.87412 * 10 8 7 12 12 Si 1.86797 * 120.00180 * 337.86316 * 10 8 7 13 13 H 1.48504 * 109.46939 * 95.68303 * 12 10 8 14 14 H 1.48501 * 109.47416 * 215.68130 * 12 10 8 15 15 H 1.48498 * 109.47275 * 335.68382 * 12 10 8 16 16 C 1.46504 * 120.00009 * 89.99728 * 7 6 5 17 17 C 1.52996 * 117.49715 * 183.18834 * 16 7 6 18 18 C 1.53001 * 117.49546 * 114.53446 * 16 7 6 19 19 H 1.09007 * 109.47307 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46883 * 299.99540 * 1 2 3 21 21 H 1.08992 * 109.47539 * 60.00123 * 1 2 3 22 22 H 1.09001 * 109.46708 * 239.99960 * 2 1 3 23 23 H 1.08997 * 109.47329 * 120.00313 * 2 1 3 24 24 H 1.08998 * 109.47001 * 60.00531 * 3 2 1 25 25 H 1.09004 * 109.47203 * 299.99985 * 3 2 1 26 26 H 1.09003 * 109.47211 * 300.00384 * 5 4 3 27 27 H 1.09007 * 109.46881 * 60.00059 * 5 4 3 28 28 H 1.09007 * 109.47058 * 185.00297 * 6 5 4 29 29 H 1.08996 * 109.47177 * 304.99875 * 6 5 4 30 30 H 0.96996 * 120.00194 * 179.97438 * 11 10 8 31 31 H 1.08996 * 115.54804 * 328.86656 * 16 7 6 32 32 H 1.08994 * 117.50142 * 0.02562 * 17 16 7 33 33 H 1.09004 * 117.49497 * 145.01976 * 17 16 7 34 34 H 1.09006 * 117.49689 * 214.98105 * 18 16 7 35 35 H 1.09002 * 117.50299 * 359.97054 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0012 6 6 5.5754 2.6270 -0.0025 7 7 6.0151 2.0065 -1.2546 8 6 6.1362 0.6451 -1.3384 9 1 5.8439 0.1316 -2.2425 10 6 6.6344 -0.0750 -0.2613 11 7 6.3614 -1.3573 -0.1443 12 14 7.6924 0.7756 1.0218 13 1 6.8431 1.1920 2.1666 14 1 8.7414 -0.1612 1.4986 15 1 8.3337 1.9723 0.4202 16 6 6.3253 2.8425 -2.4170 17 6 6.7070 2.1314 -3.7168 18 6 7.7757 2.8658 -2.9035 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 3.7282 3.2886 -0.8912 27 1 3.7289 3.2891 0.8888 28 1 6.0186 3.6190 0.0867 29 1 5.8918 2.0109 0.8391 30 1 6.7098 -1.8606 0.6081 31 1 5.7523 3.7661 -2.4981 32 1 6.7270 1.0417 -3.7072 33 1 6.3854 2.5875 -4.6531 34 1 8.1568 3.8048 -3.3050 35 1 8.4993 2.2596 -2.3584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687716583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:42 Heat of formation + Delta-G solvation = -0.387181 kcal Electronic energy + Delta-G solvation = -14943.878662 eV Core-core repulsion = 12557.830285 eV Total energy + Delta-G solvation = -2386.048377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.71324 -36.72364 -33.83669 -32.83337 -31.22570 -28.08485 -25.44519 -23.96570 -22.11319 -21.34289 -20.94900 -19.50748 -16.46368 -16.04764 -15.71592 -15.13435 -15.03159 -13.96350 -13.70540 -13.60124 -12.80288 -12.40564 -12.22279 -12.12109 -11.59109 -11.48632 -11.29116 -10.75010 -10.60491 -10.48518 -10.38279 -10.30761 -9.93535 -9.63209 -9.38194 -9.34645 -8.79039 -8.35088 -6.61286 -5.85266 -3.26309 3.38377 3.52720 3.58195 4.39546 4.63145 4.84241 4.94116 5.33660 5.38973 5.46593 5.66978 5.76245 5.81559 5.83714 5.91833 5.96216 6.02745 6.08477 6.12099 6.20146 6.27958 6.35682 6.46787 6.54031 6.55592 6.69445 6.77219 6.97877 7.17177 8.05691 8.20585 8.53783 9.09251 9.84608 10.21761 11.30340 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.011260 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.360414 B = 2486.047925 C = 2961.612800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.061 3.939 4 O -0.345 6.345 5 C 0.049 3.951 6 C 0.137 3.863 7 N -0.568 5.568 8 C -0.250 4.250 9 H 0.078 0.922 10 C 0.045 3.955 11 N -0.896 5.896 12 Si 0.869 3.131 13 H -0.286 1.286 14 H -0.303 1.303 15 H -0.269 1.269 16 C 0.119 3.881 17 C -0.187 4.187 18 C -0.225 4.225 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.260 0.740 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 7.800 -0.343 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.016 4.016 4 O -0.263 6.263 5 C -0.030 4.030 6 C 0.011 3.989 7 N -0.286 5.286 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.156 4.156 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.215 1.215 14 H -0.231 1.231 15 H -0.194 1.194 16 C 0.011 3.989 17 C -0.226 4.226 18 C -0.266 4.266 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.519 7.444 -0.230 9.898 hybrid contribution 0.462 0.641 0.799 1.124 sum -6.058 8.085 0.570 10.119 Atomic orbital electron populations 1.21691 0.95786 1.01600 1.01256 1.21389 0.94364 0.96261 1.03926 1.22404 0.83794 0.97100 0.98325 1.88293 1.16688 1.26467 1.94810 1.23209 0.97196 0.85074 0.97548 1.21295 0.90349 0.96701 0.90512 1.43594 1.74487 1.03286 1.07247 1.18542 1.36990 0.79527 1.02784 0.90407 1.25363 0.97713 0.94802 0.97674 1.69868 1.44897 1.08069 1.30854 0.87045 0.81352 0.79600 0.82091 1.21454 1.23099 1.19357 1.21149 0.93832 0.94847 0.89115 1.23047 1.04427 1.01014 0.94063 1.23392 0.95627 1.01098 1.06468 0.92459 0.93133 0.92974 0.90717 0.91281 0.95024 0.94644 0.94530 0.95408 0.92608 0.91879 0.93006 0.89389 0.87849 0.90621 0.90946 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -2.03 6.30 -26.73 -0.17 -2.20 16 3 C 0.06 1.08 5.94 37.16 0.22 1.30 16 4 O -0.34 -7.78 9.82 -35.23 -0.35 -8.12 16 5 C 0.05 0.97 6.28 37.16 0.23 1.21 16 6 C 0.14 3.03 4.98 -4.05 -0.02 3.01 16 7 N -0.57 -13.72 2.37 -165.67 -0.39 -14.11 16 8 C -0.25 -7.04 8.46 -15.06 -0.13 -7.17 16 9 H 0.08 2.39 6.86 -52.49 -0.36 2.03 16 10 C 0.04 1.32 5.30 -17.43 -0.09 1.22 16 11 N -0.90 -27.81 13.97 55.49 0.78 -27.04 16 12 Si 0.87 22.65 25.07 -169.99 -4.26 18.38 16 13 H -0.29 -7.32 6.69 56.52 0.38 -6.94 16 14 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 15 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.12 2.46 6.56 -67.93 -0.45 2.02 16 17 C -0.19 -3.69 9.80 -26.70 -0.26 -3.95 16 18 C -0.22 -4.39 10.36 -26.70 -0.28 -4.67 16 19 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 29 H 0.06 1.55 3.41 -51.93 -0.18 1.37 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.10 2.31 6.45 -51.93 -0.33 1.97 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 LS Contribution 284.97 15.07 4.29 4.29 Total: -1.00 -31.27 284.97 -6.45 -37.71 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.95 Total: -0.43 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.57 Total: -10.69 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.38 Total: -41.15 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.35 Total: -8.12 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.26 Total: 18.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.27 -6.45 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.327 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds