Wall clock time and date at job start Mon Mar 30 2020 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46852 * 2 1 4 4 O 1.42905 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.42893 * 114.00037 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47126 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47232 * 65.00276 * 6 5 4 8 8 C 1.36939 * 120.00094 * 269.99794 * 7 6 5 9 9 H 1.08002 * 119.99838 * 141.33817 * 8 7 6 10 10 C 1.38810 * 119.99768 * 321.34751 * 8 7 6 11 11 N 1.31624 * 119.99814 * 157.87412 * 10 8 7 12 12 Si 1.86797 * 120.00180 * 337.86316 * 10 8 7 13 13 H 1.48504 * 109.46939 * 95.68303 * 12 10 8 14 14 H 1.48501 * 109.47416 * 215.68130 * 12 10 8 15 15 H 1.48498 * 109.47275 * 335.68382 * 12 10 8 16 16 C 1.46504 * 120.00009 * 89.99728 * 7 6 5 17 17 C 1.52996 * 117.49715 * 183.18834 * 16 7 6 18 18 C 1.53001 * 117.49546 * 114.53446 * 16 7 6 19 19 H 1.09007 * 109.47307 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46883 * 299.99540 * 1 2 3 21 21 H 1.08992 * 109.47539 * 60.00123 * 1 2 3 22 22 H 1.09001 * 109.46708 * 239.99960 * 2 1 3 23 23 H 1.08997 * 109.47329 * 120.00313 * 2 1 3 24 24 H 1.08998 * 109.47001 * 60.00531 * 3 2 1 25 25 H 1.09004 * 109.47203 * 299.99985 * 3 2 1 26 26 H 1.09003 * 109.47211 * 300.00384 * 5 4 3 27 27 H 1.09007 * 109.46881 * 60.00059 * 5 4 3 28 28 H 1.09007 * 109.47058 * 185.00297 * 6 5 4 29 29 H 1.08996 * 109.47177 * 304.99875 * 6 5 4 30 30 H 0.96996 * 120.00194 * 179.97438 * 11 10 8 31 31 H 1.08996 * 115.54804 * 328.86656 * 16 7 6 32 32 H 1.08994 * 117.50142 * 0.02562 * 17 16 7 33 33 H 1.09004 * 117.49497 * 145.01976 * 17 16 7 34 34 H 1.09006 * 117.49689 * 214.98105 * 18 16 7 35 35 H 1.09002 * 117.50299 * 359.97054 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0012 6 6 5.5754 2.6270 -0.0025 7 7 6.0151 2.0065 -1.2546 8 6 6.1362 0.6451 -1.3384 9 1 5.8439 0.1316 -2.2425 10 6 6.6344 -0.0750 -0.2613 11 7 6.3614 -1.3573 -0.1443 12 14 7.6924 0.7756 1.0218 13 1 6.8431 1.1920 2.1666 14 1 8.7414 -0.1612 1.4986 15 1 8.3337 1.9723 0.4202 16 6 6.3253 2.8425 -2.4170 17 6 6.7070 2.1314 -3.7168 18 6 7.7757 2.8658 -2.9035 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 3.7282 3.2886 -0.8912 27 1 3.7289 3.2891 0.8888 28 1 6.0186 3.6190 0.0867 29 1 5.8918 2.0109 0.8391 30 1 6.7098 -1.8606 0.6081 31 1 5.7523 3.7661 -2.4981 32 1 6.7270 1.0417 -3.7072 33 1 6.3854 2.5875 -4.6531 34 1 8.1568 3.8048 -3.3050 35 1 8.4993 2.2596 -2.3584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687716583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:41 Heat of formation + Delta-G solvation = -20.658482 kcal Electronic energy + Delta-G solvation = -14944.757691 eV Core-core repulsion = 12557.830285 eV Total energy + Delta-G solvation = -2386.927407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35811 -38.33644 -35.44619 -34.42279 -33.21224 -29.81931 -26.82298 -25.89958 -23.73715 -22.91235 -22.27795 -21.34017 -18.43091 -17.67764 -17.37878 -16.84132 -16.67174 -15.54908 -15.38552 -15.08551 -14.58022 -14.03063 -13.96367 -13.77076 -13.05337 -12.88067 -12.79833 -12.62315 -12.26391 -12.14402 -11.88444 -11.77764 -11.64172 -11.53611 -11.21056 -10.93768 -10.54639 -10.28213 -8.55316 -8.09403 -5.46200 1.30113 1.39829 1.50743 2.47688 2.96367 3.06272 3.27695 3.42220 4.05900 4.14754 4.28963 4.34120 4.40259 4.42882 4.46070 4.54285 4.56820 4.64319 4.68400 4.77729 4.91114 4.95535 5.05213 5.07467 5.16536 5.25875 5.33846 5.39399 5.56051 6.03715 6.27885 6.64544 7.08727 7.73085 8.11934 9.10714 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.011260 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.360414 B = 2486.047925 C = 2961.612800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.395 6.395 5 C 0.050 3.950 6 C 0.127 3.873 7 N -0.583 5.583 8 C -0.224 4.224 9 H 0.035 0.965 10 C -0.015 4.015 11 N -0.949 5.949 12 Si 0.934 3.066 13 H -0.278 1.278 14 H -0.314 1.314 15 H -0.256 1.256 16 C 0.104 3.896 17 C -0.189 4.189 18 C -0.211 4.211 19 H 0.065 0.935 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.257 0.743 31 H 0.127 0.873 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 11.011 -0.279 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.315 6.315 5 C -0.029 4.029 6 C 0.003 3.997 7 N -0.302 5.302 8 C -0.354 4.354 9 H 0.052 0.948 10 C -0.210 4.210 11 N -0.593 5.593 12 Si 0.763 3.237 13 H -0.206 1.206 14 H -0.243 1.243 15 H -0.180 1.180 16 C -0.003 4.003 17 C -0.227 4.227 18 C -0.251 4.251 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.251 10.711 -0.177 12.936 hybrid contribution 0.623 -0.327 0.668 0.970 sum -6.628 10.384 0.491 12.329 Atomic orbital electron populations 1.21625 0.92171 1.02754 1.02726 1.21424 0.97468 0.95733 1.01464 1.22602 0.81600 0.97609 1.00022 1.88234 1.19509 1.28507 1.95222 1.23189 0.95434 0.84494 0.99742 1.21463 0.92372 0.97586 0.88325 1.43693 1.75305 1.02109 1.09124 1.18284 1.34656 0.81727 1.00758 0.94757 1.25934 0.99462 0.95321 1.00329 1.70010 1.47212 1.09919 1.32192 0.85988 0.79233 0.78486 0.79944 1.20591 1.24280 1.17957 1.21531 0.95197 0.95749 0.87854 1.23022 1.05038 0.99043 0.95629 1.23363 0.94250 1.02066 1.05455 0.91575 0.91337 0.91719 0.93799 0.93205 0.92559 0.93304 0.92974 0.92248 0.88967 0.94665 0.93433 0.85530 0.91756 0.86973 0.86879 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.12 -4.13 6.30 30.59 0.19 -3.94 16 3 C 0.06 1.97 5.94 71.98 0.43 2.40 16 4 O -0.40 -17.64 9.82 -148.98 -1.46 -19.11 16 5 C 0.05 1.84 6.28 71.98 0.45 2.30 16 6 C 0.13 5.31 4.98 86.38 0.43 5.74 16 7 N -0.58 -27.51 2.37 -678.05 -1.61 -29.12 16 8 C -0.22 -12.98 8.46 84.03 0.71 -12.27 16 9 H 0.03 2.26 6.86 -2.91 -0.02 2.24 16 10 C -0.01 -0.89 5.30 84.86 0.45 -0.44 16 11 N -0.95 -61.77 13.97 21.65 0.30 -61.46 16 12 Si 0.93 47.90 25.07 68.60 1.72 49.62 16 13 H -0.28 -13.75 6.69 99.48 0.67 -13.08 16 14 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 15 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 16 C 0.10 4.01 6.56 44.99 0.30 4.30 16 17 C -0.19 -7.16 9.80 30.61 0.30 -6.86 16 18 C -0.21 -7.65 10.36 30.62 0.32 -7.33 16 19 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 20 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.09 3.13 8.07 -2.38 -0.02 3.11 16 29 H 0.04 1.68 3.41 -2.39 -0.01 1.67 16 30 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 31 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 32 H 0.06 2.95 6.45 -2.39 -0.02 2.94 16 33 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 34 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -71.06 284.97 4.23 -66.83 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.99 Total: 11.79 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.29 Total: -18.55 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -1.31 Total: -90.59 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.46 Total: -19.11 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.72 Total: 49.62 kcal Total: -71.06 4.23 -66.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.171 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds