Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 N 1.46496 * 109.47030 * 239.99692 * 2 1 3 5 5 C 1.36932 * 119.99971 * 60.02129 * 4 2 1 6 6 H 1.07999 * 119.99899 * 320.11351 * 5 4 2 7 7 C 1.38812 * 120.00231 * 140.12583 * 5 4 2 8 8 N 1.31620 * 120.00013 * 340.37892 * 7 5 4 9 9 Si 1.86799 * 120.00258 * 160.39043 * 7 5 4 10 10 H 1.48499 * 109.46955 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47608 * 119.99500 * 9 7 5 12 12 H 1.48500 * 109.46867 * 239.99697 * 9 7 5 13 13 C 1.46499 * 120.00066 * 240.01641 * 4 2 1 14 14 C 1.53001 * 109.47271 * 90.00200 * 13 4 2 15 15 O 1.42898 * 112.84924 * 53.80227 * 14 13 4 16 16 C 1.53788 * 113.61133 * 282.49725 * 14 13 4 17 17 C 1.53779 * 87.07940 * 220.01711 * 16 14 13 18 18 C 1.53779 * 113.61238 * 185.00328 * 14 13 4 19 19 H 1.09004 * 109.47418 * 172.72672 * 1 2 3 20 20 H 1.09003 * 109.47358 * 292.72612 * 1 2 3 21 21 H 1.08999 * 109.47035 * 52.72497 * 1 2 3 22 22 H 1.09005 * 109.46680 * 119.99687 * 2 1 3 23 23 H 1.08998 * 109.47041 * 305.20655 * 3 2 1 24 24 H 1.09003 * 109.47484 * 65.20762 * 3 2 1 25 25 H 1.08999 * 109.47239 * 185.20749 * 3 2 1 26 26 H 0.96992 * 120.00374 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47324 * 210.00594 * 13 4 2 28 28 H 1.09006 * 109.46917 * 329.99977 * 13 4 2 29 29 H 0.96695 * 113.99760 * 309.66824 * 15 14 13 30 30 H 1.08998 * 113.61718 * 334.56510 * 16 14 13 31 31 H 1.08994 * 113.60777 * 105.47182 * 16 14 13 32 32 H 1.08997 * 113.61901 * 270.88954 * 17 16 14 33 33 H 1.08997 * 113.68872 * 139.98986 * 17 16 14 34 34 H 1.09007 * 113.61110 * 254.52639 * 18 14 13 35 35 H 1.08998 * 113.61884 * 25.34549 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6878 -0.2226 -2.4398 6 1 0.6915 0.1481 -2.6301 7 6 2.6333 -0.2249 -3.4561 8 7 3.9143 -0.2992 -3.1630 9 14 2.0878 -0.1222 -5.2397 10 1 0.6059 -0.0485 -5.3005 11 1 2.6702 1.0914 -5.8665 12 1 2.5534 -1.3285 -5.9700 13 6 2.8602 -1.8820 -1.0617 14 6 1.9754 -3.1293 -1.0151 15 8 1.0778 -3.2146 -2.1237 16 6 1.2978 -3.3533 0.3472 17 6 1.5900 -4.8512 0.1577 18 6 2.7553 -4.4283 -0.7524 19 1 -0.3634 -1.0194 -0.1301 20 1 -0.3634 0.3970 0.9479 21 1 -0.3633 0.6224 -0.8177 22 1 1.8933 -0.5138 0.8901 23 1 1.6025 1.9825 -0.8397 24 1 1.7548 1.9287 0.9329 25 1 3.1260 1.4439 -0.0933 26 1 4.5750 -0.3005 -3.8731 27 1 3.5360 -1.9475 -1.9144 28 1 3.4414 -1.8142 -0.1420 29 1 0.5674 -2.4082 -2.2794 30 1 1.8370 -2.9055 1.1820 31 1 0.2348 -3.1129 0.3508 32 1 0.7990 -5.3875 -0.3665 33 1 1.9093 -5.3540 1.0706 34 1 2.8687 -5.0558 -1.6365 35 1 3.6936 -4.2742 -0.2196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687795704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -18.302540 kcal Electronic energy + Delta-G solvation = -15640.573406 eV Core-core repulsion = 13253.748160 eV Total energy + Delta-G solvation = -2386.825245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -38.91256 -35.96966 -33.55807 -32.30009 -29.91563 -26.68794 -26.21568 -25.09827 -23.71827 -21.52441 -19.52435 -18.80282 -16.51732 -15.48669 -14.74618 -14.65945 -14.34996 -13.98650 -13.63691 -12.77232 -12.48277 -12.17581 -11.97743 -11.79725 -11.34296 -11.10406 -11.05383 -10.75489 -10.66157 -10.45263 -10.35614 -10.29530 -9.98104 -9.91193 -9.64040 -9.22259 -8.73109 -8.45968 -6.49712 -5.75538 -3.38598 3.38453 3.47610 3.48302 4.49087 4.96357 5.17256 5.26784 5.37944 5.42452 5.64857 5.93443 5.96407 6.12000 6.18063 6.22626 6.33623 6.38267 6.44324 6.50531 6.55282 6.66430 6.73072 6.80822 6.82520 6.95430 7.12518 7.21898 7.36144 7.68588 7.84909 8.55885 8.77443 9.22355 9.84148 10.43514 11.22835 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.014338 C = 0.010976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.656326 B = 1952.413498 C = 2550.515072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 C -0.146 4.146 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.062 0.938 7 C 0.021 3.979 8 N -0.884 5.884 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.288 1.288 13 C 0.134 3.866 14 C 0.102 3.898 15 O -0.550 6.550 16 C -0.161 4.161 17 C -0.137 4.137 18 C -0.132 4.132 19 H 0.046 0.954 20 H 0.034 0.966 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.253 0.747 27 H 0.097 0.903 28 H 0.030 0.970 29 H 0.387 0.613 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 -3.639 6.176 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 C -0.205 4.205 4 N -0.300 5.300 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.180 4.180 8 N -0.525 5.525 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.214 1.214 13 C 0.007 3.993 14 C 0.058 3.942 15 O -0.358 6.358 16 C -0.199 4.199 17 C -0.174 4.174 18 C -0.170 4.170 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.048 0.952 29 H 0.238 0.762 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.074 -4.208 6.031 7.970 hybrid contribution -0.376 0.653 -0.909 1.181 sum -3.449 -3.555 5.122 7.125 Atomic orbital electron populations 1.22196 0.98703 1.00842 0.99552 1.20415 0.92016 0.92035 0.89880 1.22084 1.01344 0.98199 0.98911 1.43848 1.59137 1.26057 1.00989 1.18932 0.94412 1.39601 0.86376 0.92093 1.25239 0.94832 0.99138 0.98792 1.69982 0.99611 1.51444 1.31493 0.86376 0.78449 0.77137 0.85643 1.20037 1.21912 1.21406 1.21416 0.92800 0.83866 1.01176 1.22806 0.90823 0.95837 0.84721 1.86170 1.57390 1.42547 1.49723 1.23549 1.00922 0.95670 0.99735 1.22752 0.98861 0.96866 0.98938 1.22974 0.97141 0.97518 0.99349 0.93498 0.94668 0.92957 0.93814 0.92754 0.95407 0.93153 0.93673 0.88578 0.95165 0.76245 0.90626 0.92069 0.90684 0.92654 0.91604 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.02 37.16 0.34 -2.44 16 2 C 0.16 3.30 3.25 -67.94 -0.22 3.08 16 3 C -0.15 -2.95 9.07 37.16 0.34 -2.61 16 4 N -0.58 -13.37 2.09 -165.67 -0.35 -13.71 16 5 C -0.26 -6.70 6.63 -15.06 -0.10 -6.80 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.02 0.57 4.98 -17.43 -0.09 0.48 16 8 N -0.88 -24.89 11.53 55.49 0.64 -24.25 16 9 Si 0.89 21.40 29.60 -169.99 -5.03 16.37 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 C 0.13 3.05 4.87 -4.04 -0.02 3.03 16 14 C 0.10 2.04 1.53 -89.80 -0.14 1.91 16 15 O -0.55 -12.14 13.34 -35.23 -0.47 -12.61 16 16 C -0.16 -2.76 7.36 -25.92 -0.19 -2.95 16 17 C -0.14 -2.15 8.02 -25.92 -0.21 -2.36 16 18 C -0.13 -2.31 7.47 -25.92 -0.19 -2.50 16 19 H 0.05 0.84 7.50 -51.93 -0.39 0.45 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.99 7.34 -51.93 -0.38 0.61 16 22 H 0.04 0.85 7.79 -51.93 -0.40 0.44 16 23 H 0.05 1.16 7.82 -51.93 -0.41 0.75 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.10 2.55 5.62 -51.93 -0.29 2.26 16 28 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 29 H 0.39 8.59 7.07 45.56 0.32 8.91 16 30 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 31 H 0.06 1.06 7.50 -51.93 -0.39 0.67 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 LS Contribution 278.91 15.07 4.20 4.20 Total: -1.00 -27.21 278.91 -6.72 -33.92 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.23 Total: 7.24 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -0.48 Total: -11.16 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.29 Total: -37.97 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.47 Total: -12.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.21 -6.72 -33.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687795704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.622 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds