Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 N 1.46496 * 109.47030 * 239.99692 * 2 1 3 5 5 C 1.36932 * 119.99971 * 60.02129 * 4 2 1 6 6 H 1.07999 * 119.99899 * 320.11351 * 5 4 2 7 7 C 1.38812 * 120.00231 * 140.12583 * 5 4 2 8 8 N 1.31620 * 120.00013 * 340.37892 * 7 5 4 9 9 Si 1.86799 * 120.00258 * 160.39043 * 7 5 4 10 10 H 1.48499 * 109.46955 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47608 * 119.99500 * 9 7 5 12 12 H 1.48500 * 109.46867 * 239.99697 * 9 7 5 13 13 C 1.46499 * 120.00066 * 240.01641 * 4 2 1 14 14 C 1.53001 * 109.47271 * 90.00200 * 13 4 2 15 15 O 1.42898 * 112.84924 * 53.80227 * 14 13 4 16 16 C 1.53788 * 113.61133 * 282.49725 * 14 13 4 17 17 C 1.53779 * 87.07940 * 220.01711 * 16 14 13 18 18 C 1.53779 * 113.61238 * 185.00328 * 14 13 4 19 19 H 1.09004 * 109.47418 * 172.72672 * 1 2 3 20 20 H 1.09003 * 109.47358 * 292.72612 * 1 2 3 21 21 H 1.08999 * 109.47035 * 52.72497 * 1 2 3 22 22 H 1.09005 * 109.46680 * 119.99687 * 2 1 3 23 23 H 1.08998 * 109.47041 * 305.20655 * 3 2 1 24 24 H 1.09003 * 109.47484 * 65.20762 * 3 2 1 25 25 H 1.08999 * 109.47239 * 185.20749 * 3 2 1 26 26 H 0.96992 * 120.00374 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47324 * 210.00594 * 13 4 2 28 28 H 1.09006 * 109.46917 * 329.99977 * 13 4 2 29 29 H 0.96695 * 113.99760 * 309.66824 * 15 14 13 30 30 H 1.08998 * 113.61718 * 334.56510 * 16 14 13 31 31 H 1.08994 * 113.60777 * 105.47182 * 16 14 13 32 32 H 1.08997 * 113.61901 * 270.88954 * 17 16 14 33 33 H 1.08997 * 113.68872 * 139.98986 * 17 16 14 34 34 H 1.09007 * 113.61110 * 254.52639 * 18 14 13 35 35 H 1.08998 * 113.61884 * 25.34549 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6878 -0.2226 -2.4398 6 1 0.6915 0.1481 -2.6301 7 6 2.6333 -0.2249 -3.4561 8 7 3.9143 -0.2992 -3.1630 9 14 2.0878 -0.1222 -5.2397 10 1 0.6059 -0.0485 -5.3005 11 1 2.6702 1.0914 -5.8665 12 1 2.5534 -1.3285 -5.9700 13 6 2.8602 -1.8820 -1.0617 14 6 1.9754 -3.1293 -1.0151 15 8 1.0778 -3.2146 -2.1237 16 6 1.2978 -3.3533 0.3472 17 6 1.5900 -4.8512 0.1577 18 6 2.7553 -4.4283 -0.7524 19 1 -0.3634 -1.0194 -0.1301 20 1 -0.3634 0.3970 0.9479 21 1 -0.3633 0.6224 -0.8177 22 1 1.8933 -0.5138 0.8901 23 1 1.6025 1.9825 -0.8397 24 1 1.7548 1.9287 0.9329 25 1 3.1260 1.4439 -0.0933 26 1 4.5750 -0.3005 -3.8731 27 1 3.5360 -1.9475 -1.9144 28 1 3.4414 -1.8142 -0.1420 29 1 0.5674 -2.4082 -2.2794 30 1 1.8370 -2.9055 1.1820 31 1 0.2348 -3.1129 0.3508 32 1 0.7990 -5.3875 -0.3665 33 1 1.9093 -5.3540 1.0706 34 1 2.8687 -5.0558 -1.6365 35 1 3.6936 -4.2742 -0.2196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687795704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = -34.938998 kcal Electronic energy + Delta-G solvation = -15641.294817 eV Core-core repulsion = 13253.748160 eV Total energy + Delta-G solvation = -2387.546656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45224 -37.66606 -35.18215 -34.18309 -31.71236 -28.49122 -27.75826 -26.50331 -25.50636 -23.07257 -21.29112 -20.30111 -18.36069 -17.20844 -16.54412 -16.30067 -15.89543 -15.60225 -15.41160 -14.41746 -14.12122 -13.76621 -13.58747 -13.24876 -12.99613 -12.91110 -12.79778 -12.54983 -12.35187 -12.13992 -11.92669 -11.76779 -11.66422 -11.59013 -11.30021 -10.79694 -10.49938 -10.31300 -8.43311 -7.73694 -5.39815 1.44645 1.50407 1.56590 2.53379 3.31157 3.46626 3.57938 3.87974 4.02130 4.20766 4.37199 4.43267 4.61680 4.75389 4.84127 4.88361 4.91263 4.97152 5.01118 5.09853 5.12805 5.20355 5.24552 5.26340 5.54454 5.58537 5.65374 5.69339 5.75382 5.87305 6.55965 7.06067 7.26639 7.95401 8.48404 9.19612 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.014338 C = 0.010976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.656326 B = 1952.413498 C = 2550.515072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.156 3.844 3 C -0.138 4.138 4 N -0.588 5.588 5 C -0.247 4.247 6 H 0.061 0.939 7 C -0.029 4.029 8 N -0.917 5.917 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.297 1.297 12 H -0.299 1.299 13 C 0.138 3.862 14 C 0.086 3.914 15 O -0.563 6.563 16 C -0.148 4.148 17 C -0.121 4.121 18 C -0.133 4.133 19 H 0.046 0.954 20 H 0.065 0.935 21 H 0.038 0.962 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.246 0.754 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.382 0.618 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -4.197 7.865 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.050 3.950 3 C -0.197 4.197 4 N -0.310 5.310 5 C -0.378 4.378 6 H 0.078 0.922 7 C -0.227 4.227 8 N -0.561 5.561 9 Si 0.774 3.226 10 H -0.188 1.188 11 H -0.224 1.224 12 H -0.226 1.226 13 C 0.011 3.989 14 C 0.043 3.957 15 O -0.371 6.371 16 C -0.186 4.186 17 C -0.158 4.158 18 C -0.171 4.171 19 H 0.065 0.935 20 H 0.084 0.916 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.232 0.768 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.429 -4.769 7.738 10.111 hybrid contribution 0.039 0.846 -1.361 1.603 sum -4.390 -3.923 6.377 8.679 Atomic orbital electron populations 1.22046 0.96540 1.00816 1.00706 1.20630 0.93554 0.91719 0.89050 1.21999 0.99288 0.98446 0.99997 1.44013 1.59016 1.26676 1.01302 1.19071 0.93940 1.37374 0.87379 0.92196 1.25795 0.94947 1.00364 1.01590 1.70107 1.00364 1.53913 1.31729 0.85567 0.78535 0.76110 0.82350 1.18797 1.22448 1.22641 1.21287 0.92870 0.85254 0.99478 1.22956 0.91160 0.95658 0.85958 1.86169 1.57661 1.42199 1.51038 1.23445 1.00694 0.96782 0.97679 1.22671 0.97555 0.96049 0.99539 1.23063 0.98398 0.95919 0.99760 0.93500 0.91635 0.94251 0.92448 0.94596 0.91849 0.95893 0.94459 0.92668 0.94771 0.76789 0.89497 0.91971 0.90807 0.89618 0.92527 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.02 71.98 0.65 -4.08 16 2 C 0.16 6.02 3.25 44.99 0.15 6.17 16 3 C -0.14 -5.38 9.07 71.98 0.65 -4.73 16 4 N -0.59 -26.90 2.09 -678.04 -1.42 -28.32 16 5 C -0.25 -12.58 6.63 84.03 0.56 -12.02 16 6 H 0.06 3.04 7.06 -2.91 -0.02 3.02 16 7 C -0.03 -1.59 4.98 84.86 0.42 -1.17 16 8 N -0.92 -53.18 11.53 21.65 0.25 -52.93 16 9 Si 0.94 44.80 29.60 68.60 2.03 46.83 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 C 0.14 6.25 4.87 86.38 0.42 6.67 16 14 C 0.09 3.34 1.53 -10.27 -0.02 3.33 16 15 O -0.56 -24.56 13.34 -148.98 -1.99 -26.55 16 16 C -0.15 -4.65 7.36 31.12 0.23 -4.42 16 17 C -0.12 -3.39 8.02 31.12 0.25 -3.14 16 18 C -0.13 -4.44 7.47 31.12 0.23 -4.21 16 19 H 0.05 1.55 7.50 -2.38 -0.02 1.53 16 20 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.04 1.40 7.34 -2.39 -0.02 1.38 16 22 H 0.06 2.06 7.79 -2.38 -0.02 2.04 16 23 H 0.03 1.49 7.82 -2.39 -0.02 1.48 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.06 3.01 5.62 -2.39 -0.01 2.99 16 28 H 0.03 1.48 7.83 -2.38 -0.02 1.46 16 29 H 0.38 16.88 7.07 -74.06 -0.52 16.36 16 30 H 0.09 2.54 8.03 -2.39 -0.02 2.52 16 31 H 0.06 1.95 7.50 -2.39 -0.02 1.93 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.10 2.95 8.10 -2.39 -0.02 2.93 16 Total: -1.00 -58.53 278.91 2.94 -55.58 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.53 Total: 23.00 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.54 Total: -17.61 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.17 Total: -81.26 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -1.99 Total: -26.55 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -58.53 2.94 -55.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687795704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.645 kcal (2) G-P(sol) polarization free energy of solvation -58.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds