Wall clock time and date at job start Mon Mar 30 2020 04:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46294 * 2 1 4 4 C 1.53041 * 109.46479 * 240.02396 * 2 1 3 5 5 C 1.53112 * 109.28060 * 180.81648 * 4 2 1 6 6 C 1.53115 * 109.16265 * 57.65310 * 5 4 2 7 7 H 1.09000 * 109.50482 * 62.32769 * 6 5 4 8 8 C 1.52997 * 109.50522 * 182.40293 * 6 5 4 9 9 O 1.42893 * 109.47222 * 294.99952 * 8 6 5 10 10 C 1.53037 * 109.27937 * 302.34988 * 6 5 4 11 11 N 1.46843 * 109.52568 * 59.17561 * 10 6 5 12 12 C 1.46901 * 111.00052 * 174.16442 * 11 10 6 13 13 C 1.50709 * 109.47141 * 293.04196 * 12 11 10 14 14 H 1.08000 * 119.99413 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99848 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99950 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00516 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47152 * 89.99847 * 17 15 13 19 19 H 1.48493 * 109.47182 * 209.99935 * 17 15 13 20 20 H 1.48505 * 109.46761 * 330.00148 * 17 15 13 21 21 H 1.08998 * 109.47642 * 186.98215 * 1 2 3 22 22 H 1.09002 * 109.47359 * 306.98128 * 1 2 3 23 23 H 1.09000 * 109.47010 * 66.98126 * 1 2 3 24 24 H 1.09000 * 109.49742 * 300.75831 * 4 2 1 25 25 H 1.08998 * 109.50317 * 60.83295 * 4 2 1 26 26 H 1.08998 * 109.52468 * 177.55995 * 5 4 2 27 27 H 1.08999 * 109.52344 * 297.75240 * 5 4 2 28 28 H 1.09003 * 109.47074 * 55.00676 * 8 6 5 29 29 H 1.09006 * 109.46915 * 174.99883 * 8 6 5 30 30 H 0.96709 * 113.99850 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46394 * 179.19683 * 10 6 5 32 32 H 1.09004 * 109.46137 * 299.15889 * 10 6 5 33 33 H 1.09001 * 109.47356 * 53.04127 * 12 11 10 34 34 H 1.08996 * 109.47266 * 173.04006 * 12 11 10 35 35 H 0.96993 * 120.00289 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7364 -1.2354 6 6 4.0545 -1.4192 0.0469 7 1 3.7127 -2.4541 0.0593 8 6 5.5833 -1.3856 0.0982 9 8 6.1131 -2.1716 -0.9711 10 6 3.4862 -0.6780 1.2592 11 7 2.0190 -0.6919 1.1994 12 6 1.4370 -0.1106 2.4165 13 6 1.7369 -1.0037 3.5928 14 1 2.3036 -1.9120 3.4504 15 6 1.2888 -0.6606 4.8507 16 7 1.5500 -1.4403 5.8772 17 14 0.3092 0.9108 5.0970 18 1 -1.1381 0.6230 4.9311 19 1 0.5556 1.4386 6.4629 20 1 0.7316 1.9198 4.0926 21 1 -0.3634 -1.0200 0.1249 22 1 -0.3634 0.6182 0.8209 23 1 -0.3633 0.4019 -0.9458 24 1 1.6657 -1.7447 -1.2576 25 1 1.6891 -0.1986 -2.1399 26 1 3.9379 -1.2866 -2.1018 27 1 3.9458 0.2866 -1.2669 28 1 5.9277 -0.3563 -0.0021 29 1 5.9238 -1.7914 1.0508 30 1 7.0794 -2.1953 -1.0005 31 1 3.8171 -1.1703 2.1737 32 1 3.8402 0.3529 1.2534 33 1 1.8676 0.8756 2.5900 34 1 0.3576 -0.0195 2.2954 35 1 1.2345 -1.1992 6.7621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692044230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:48 Heat of formation + Delta-G solvation = -84.443378 kcal Electronic energy + Delta-G solvation = -14991.774446 eV Core-core repulsion = 12602.081118 eV Total energy + Delta-G solvation = -2389.693327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40215 -37.78510 -35.36386 -34.15527 -33.36105 -29.57450 -29.00336 -25.66698 -24.76510 -22.96595 -21.41779 -20.58761 -18.93464 -18.22876 -16.78191 -16.41958 -16.01181 -15.90115 -15.09037 -14.89178 -14.77545 -14.58678 -14.05522 -13.49138 -13.39390 -13.02766 -12.79132 -12.61426 -12.47093 -12.34232 -11.90499 -11.81168 -11.60307 -11.56940 -11.13418 -11.02394 -10.77624 -10.74422 -8.98503 -8.28622 -6.31311 1.33265 1.34443 1.45227 2.33453 2.98755 3.06528 3.55447 3.83623 3.93330 3.97509 4.26280 4.34797 4.47657 4.50282 4.55189 4.63483 4.71758 4.75777 4.89909 4.91849 5.02969 5.04619 5.11725 5.17078 5.26584 5.31190 5.40581 5.51099 5.59885 6.03413 6.42324 6.70418 6.75226 6.93861 7.32041 8.88140 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.009268 C = 0.007632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.901946 B = 3020.554102 C = 3668.004001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 H 0.031 0.969 4 C -0.104 4.104 5 C -0.101 4.101 6 C -0.082 4.082 7 H 0.060 0.940 8 C 0.088 3.912 9 O -0.585 6.585 10 C 0.077 3.923 11 N -0.540 5.540 12 C 0.169 3.831 13 C -0.514 4.514 14 H 0.035 0.965 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.945 3.055 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.253 1.253 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.396 0.604 31 H 0.052 0.948 32 H 0.025 0.975 33 H -0.018 1.018 34 H 0.039 0.961 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 5.149 -14.737 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.049 0.951 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.101 4.101 7 H 0.078 0.922 8 C 0.010 3.990 9 O -0.393 6.393 10 C -0.051 4.051 11 N -0.265 5.265 12 C 0.042 3.958 13 C -0.553 4.553 14 H 0.054 0.946 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.769 3.231 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.177 1.177 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.246 0.754 31 H 0.070 0.930 32 H 0.043 0.957 33 H -0.001 1.001 34 H 0.057 0.943 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.496 4.560 -14.713 15.795 hybrid contribution 0.506 1.123 1.193 1.715 sum 4.002 5.682 -13.519 15.201 Atomic orbital electron populations 1.21886 0.94060 1.02026 1.02066 1.21786 0.96050 0.95035 0.90846 0.95095 1.21613 0.95471 1.00889 0.96215 1.21496 0.95428 1.00242 0.96712 1.21105 0.93970 0.99938 0.95116 0.92171 1.22032 0.92943 0.94735 0.89309 1.86410 1.27527 1.73315 1.52024 1.21775 0.87980 0.97700 0.97680 1.61769 1.06781 1.55610 1.02318 1.20001 0.95549 0.92255 0.87965 1.21278 1.34308 1.07702 0.91992 0.94630 1.25837 0.97179 1.00480 0.95459 1.70052 1.48407 1.40051 1.00424 0.85743 0.79603 0.79881 0.77920 1.18825 1.20643 1.17652 0.92810 0.93730 0.89628 0.92203 0.89173 0.90661 0.91828 0.92236 0.93873 0.75388 0.92952 0.95698 1.00080 0.94323 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.55 71.98 0.62 -3.77 16 2 C 0.07 2.37 2.44 44.94 0.11 2.48 16 3 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 4 C -0.10 -2.86 5.37 30.65 0.16 -2.70 16 5 C -0.10 -2.74 5.15 30.67 0.16 -2.58 16 6 C -0.08 -2.65 2.59 -10.74 -0.03 -2.68 16 7 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 8 C 0.09 2.32 6.43 71.98 0.46 2.78 16 9 O -0.58 -13.91 13.24 -148.98 -1.97 -15.89 16 10 C 0.08 3.04 4.58 86.33 0.40 3.44 16 11 N -0.54 -23.01 4.47 -875.64 -3.92 -26.93 16 12 C 0.17 8.30 3.53 85.56 0.30 8.60 16 13 C -0.51 -30.38 8.99 25.60 0.23 -30.15 16 14 H 0.04 2.35 7.45 -2.91 -0.02 2.33 16 15 C 0.01 0.44 5.47 84.65 0.46 0.91 16 16 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 17 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.04 1.45 6.51 -2.39 -0.02 1.44 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.91 7.90 -2.39 -0.02 1.89 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.16 8.14 -2.38 -0.02 1.15 16 30 H 0.40 5.32 9.12 -74.05 -0.68 4.64 16 31 H 0.05 2.41 6.78 -2.39 -0.02 2.39 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H -0.02 -0.91 7.17 -2.39 -0.02 -0.93 16 34 H 0.04 1.85 5.18 -2.39 -0.01 1.84 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -69.09 272.84 -0.51 -69.60 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.32 Total: 10.21 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 2.87 Total: -23.67 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -3.62 Total: -86.65 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.97 Total: -15.89 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -69.09 -0.51 -69.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.847 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds