Wall clock time and date at job start Mon Mar 30 2020 04:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46175 * 2 1 4 4 C 1.53039 * 109.45697 * 119.97625 * 2 1 3 5 5 C 1.53115 * 109.28006 * 179.18912 * 4 2 1 6 6 C 1.53114 * 109.16023 * 302.34476 * 5 4 2 7 7 H 1.08998 * 109.50835 * 297.71458 * 6 5 4 8 8 C 1.53001 * 109.50183 * 177.59626 * 6 5 4 9 9 O 1.42892 * 109.47175 * 65.19663 * 8 6 5 10 10 C 1.53036 * 109.28045 * 57.65588 * 6 5 4 11 11 N 1.46842 * 109.46257 * 240.02209 * 2 1 3 12 12 C 1.46902 * 111.00033 * 54.15475 * 11 2 1 13 13 C 1.50693 * 109.47463 * 190.66601 * 12 11 2 14 14 H 1.08000 * 119.99953 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99713 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00176 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46969 * 90.00187 * 17 15 13 19 19 H 1.48502 * 109.46706 * 209.99990 * 17 15 13 20 20 H 1.48501 * 109.47091 * 330.00017 * 17 15 13 21 21 H 1.09007 * 109.47076 * 172.53460 * 1 2 3 22 22 H 1.09008 * 109.46766 * 292.52991 * 1 2 3 23 23 H 1.08996 * 109.47267 * 52.52884 * 1 2 3 24 24 H 1.09000 * 109.50086 * 299.13010 * 4 2 1 25 25 H 1.08997 * 109.50056 * 59.24256 * 4 2 1 26 26 H 1.08997 * 109.52293 * 182.43800 * 5 4 2 27 27 H 1.08999 * 109.52343 * 62.24899 * 5 4 2 28 28 H 1.09008 * 109.46994 * 185.20136 * 8 6 5 29 29 H 1.09004 * 109.47286 * 305.19022 * 8 6 5 30 30 H 0.96701 * 114.00286 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46504 * 60.83016 * 10 6 5 32 32 H 1.08994 * 109.46673 * 180.81535 * 10 6 5 33 33 H 1.09002 * 109.47137 * 310.66564 * 12 11 2 34 34 H 1.09006 * 109.47259 * 70.66494 * 12 11 2 35 35 H 0.97008 * 120.00105 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5708 -0.7364 1.2357 6 6 4.0546 -1.4192 -0.0465 7 1 3.7121 -2.4539 -0.0594 8 6 5.5833 -1.3856 -0.0976 9 8 6.1130 -2.1752 0.9690 10 6 3.4865 -0.6780 -1.2590 11 7 2.0193 -0.6918 -1.1993 12 6 1.4375 -0.1106 -2.4165 13 6 1.7481 -0.9973 -3.5947 14 1 2.3201 -1.9023 -3.4534 15 6 1.3011 -0.6537 -4.8530 16 7 0.6032 0.4477 -5.0248 17 14 1.6855 -1.7532 -6.3134 18 1 0.6040 -2.7579 -6.4748 19 1 1.7811 -0.9268 -7.5435 20 1 2.9771 -2.4489 -6.0827 21 1 -0.3633 -1.0190 -0.1335 22 1 -0.3633 0.3938 0.9493 23 1 -0.3633 0.6252 -0.8156 24 1 1.6894 -0.1982 2.1399 25 1 1.6655 -1.7447 1.2576 26 1 3.9376 -1.2866 2.1021 27 1 3.9457 0.2866 1.2673 28 1 5.9240 -1.7881 -1.0516 29 1 5.9279 -0.3566 0.0063 30 1 7.0793 -2.1998 0.9980 31 1 3.8404 0.3530 -1.2530 32 1 3.8173 -1.1703 -2.1734 33 1 0.3569 -0.0277 -2.2990 34 1 1.8615 0.8794 -2.5851 35 1 0.2884 0.6893 -5.9100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692044231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:51 Heat of formation + Delta-G solvation = -64.942750 kcal Electronic energy + Delta-G solvation = -14953.270820 eV Core-core repulsion = 12564.423104 eV Total energy + Delta-G solvation = -2388.847717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.86878 -36.59431 -33.57649 -32.50189 -31.53254 -27.83626 -26.81234 -24.11241 -23.42422 -21.45549 -19.94227 -19.07957 -17.18141 -16.27868 -15.19823 -14.87931 -14.46110 -14.25343 -13.78483 -13.45935 -13.10296 -12.64263 -12.17550 -11.99991 -11.67301 -11.33654 -11.18631 -11.02774 -10.79727 -10.65681 -10.37323 -10.26435 -10.04264 -10.02510 -9.71852 -9.36233 -9.10135 -8.39067 -7.16375 -6.00774 -4.01473 3.32808 3.38692 3.42124 4.30579 4.45148 4.95429 5.16236 5.26879 5.31886 5.35031 5.51305 5.71253 5.78604 5.81804 6.00788 6.05089 6.12120 6.21095 6.22864 6.39468 6.44050 6.57116 6.64442 6.77989 6.80112 6.90882 7.38897 7.39833 7.70896 7.84212 8.15358 8.27812 8.61486 9.06497 9.62364 11.10061 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.009228 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.627855 B = 3033.565282 C = 3820.687279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 H 0.025 0.975 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.086 4.086 7 H 0.082 0.918 8 C 0.081 3.919 9 O -0.574 6.574 10 C 0.074 3.926 11 N -0.530 5.530 12 C 0.188 3.812 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.373 0.627 31 H 0.018 0.982 32 H 0.083 0.917 33 H 0.040 0.960 34 H -0.012 1.012 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -1.346 10.292 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 H 0.043 0.957 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.105 4.105 7 H 0.100 0.900 8 C 0.003 3.997 9 O -0.378 6.378 10 C -0.055 4.055 11 N -0.255 5.255 12 C 0.064 3.936 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.219 0.781 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.005 0.995 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.915 -1.803 10.292 12.007 hybrid contribution 1.019 0.509 -1.153 1.621 sum 6.934 -1.294 9.139 11.544 Atomic orbital electron populations 1.21865 0.94953 1.02642 1.00557 1.21534 0.95199 0.94775 0.91461 0.95667 1.21633 0.95188 1.01270 0.96691 1.21522 0.95769 0.99669 0.97529 1.21225 0.91829 1.01590 0.95865 0.89968 1.22233 0.94916 0.93526 0.89030 1.86483 1.25137 1.73256 1.52970 1.21834 0.89343 0.97302 0.96997 1.62017 1.05335 1.55199 1.02990 1.19813 0.95611 0.93044 0.85163 1.21191 1.33898 1.07885 0.91463 0.91942 1.24985 0.95384 0.95329 0.98952 1.69961 1.37229 1.23850 1.22879 0.86523 0.78766 0.80379 0.81889 1.20646 1.21370 1.19902 0.91926 0.93545 0.92039 0.92548 0.91407 0.91953 0.93061 0.93498 0.94043 0.78142 0.96365 0.89831 0.94179 0.99455 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.53 37.16 0.32 -2.23 16 2 C 0.08 1.49 2.44 -67.72 -0.17 1.32 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -1.74 5.37 -26.65 -0.14 -1.89 16 5 C -0.11 -1.65 5.15 -26.61 -0.14 -1.79 16 6 C -0.09 -1.43 2.59 -90.54 -0.23 -1.66 16 7 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 8 C 0.08 1.12 6.43 37.16 0.24 1.36 16 9 O -0.57 -7.45 13.25 -35.23 -0.47 -7.92 16 10 C 0.07 1.47 4.58 -3.83 -0.02 1.45 16 11 N -0.53 -11.66 4.48 -228.13 -1.02 -12.68 16 12 C 0.19 4.94 4.45 -4.98 -0.02 4.92 16 13 C -0.51 -14.27 8.43 -34.44 -0.29 -14.56 16 14 H 0.06 1.75 7.17 -52.49 -0.38 1.37 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 22 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.06 1.20 6.55 -51.93 -0.34 0.86 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.37 2.96 9.12 45.56 0.42 3.38 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 1.79 6.75 -51.93 -0.35 1.44 16 33 H 0.04 1.11 5.79 -51.93 -0.30 0.81 16 34 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 276.43 15.07 4.17 4.17 Total: -1.00 -30.73 276.43 -7.30 -38.03 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.15 Total: -0.62 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.55 Total: -11.61 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.29 Total: -38.76 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.47 Total: -7.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.73 -7.30 -38.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.911 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds