Wall clock time and date at job start Mon Mar 30 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46175 * 2 1 4 4 C 1.53039 * 109.45697 * 119.97625 * 2 1 3 5 5 C 1.53115 * 109.28006 * 179.18912 * 4 2 1 6 6 C 1.53114 * 109.16023 * 302.34476 * 5 4 2 7 7 H 1.08998 * 109.50835 * 297.71458 * 6 5 4 8 8 C 1.53001 * 109.50183 * 177.59626 * 6 5 4 9 9 O 1.42892 * 109.47175 * 65.19663 * 8 6 5 10 10 C 1.53036 * 109.28045 * 57.65588 * 6 5 4 11 11 N 1.46842 * 109.46257 * 240.02209 * 2 1 3 12 12 C 1.46902 * 111.00033 * 54.15475 * 11 2 1 13 13 C 1.50693 * 109.47463 * 190.66601 * 12 11 2 14 14 H 1.08000 * 119.99953 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99713 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00176 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46969 * 90.00187 * 17 15 13 19 19 H 1.48502 * 109.46706 * 209.99990 * 17 15 13 20 20 H 1.48501 * 109.47091 * 330.00017 * 17 15 13 21 21 H 1.09007 * 109.47076 * 172.53460 * 1 2 3 22 22 H 1.09008 * 109.46766 * 292.52991 * 1 2 3 23 23 H 1.08996 * 109.47267 * 52.52884 * 1 2 3 24 24 H 1.09000 * 109.50086 * 299.13010 * 4 2 1 25 25 H 1.08997 * 109.50056 * 59.24256 * 4 2 1 26 26 H 1.08997 * 109.52293 * 182.43800 * 5 4 2 27 27 H 1.08999 * 109.52343 * 62.24899 * 5 4 2 28 28 H 1.09008 * 109.46994 * 185.20136 * 8 6 5 29 29 H 1.09004 * 109.47286 * 305.19022 * 8 6 5 30 30 H 0.96701 * 114.00286 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46504 * 60.83016 * 10 6 5 32 32 H 1.08994 * 109.46673 * 180.81535 * 10 6 5 33 33 H 1.09002 * 109.47137 * 310.66564 * 12 11 2 34 34 H 1.09006 * 109.47259 * 70.66494 * 12 11 2 35 35 H 0.97008 * 120.00105 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5708 -0.7364 1.2357 6 6 4.0546 -1.4192 -0.0465 7 1 3.7121 -2.4539 -0.0594 8 6 5.5833 -1.3856 -0.0976 9 8 6.1130 -2.1752 0.9690 10 6 3.4865 -0.6780 -1.2590 11 7 2.0193 -0.6918 -1.1993 12 6 1.4375 -0.1106 -2.4165 13 6 1.7481 -0.9973 -3.5947 14 1 2.3201 -1.9023 -3.4534 15 6 1.3011 -0.6537 -4.8530 16 7 0.6032 0.4477 -5.0248 17 14 1.6855 -1.7532 -6.3134 18 1 0.6040 -2.7579 -6.4748 19 1 1.7811 -0.9268 -7.5435 20 1 2.9771 -2.4489 -6.0827 21 1 -0.3633 -1.0190 -0.1335 22 1 -0.3633 0.3938 0.9493 23 1 -0.3633 0.6252 -0.8156 24 1 1.6894 -0.1982 2.1399 25 1 1.6655 -1.7447 1.2576 26 1 3.9376 -1.2866 2.1021 27 1 3.9457 0.2866 1.2673 28 1 5.9240 -1.7881 -1.0516 29 1 5.9279 -0.3566 0.0063 30 1 7.0793 -2.1998 0.9980 31 1 3.8404 0.3530 -1.2530 32 1 3.8173 -1.1703 -2.1734 33 1 0.3569 -0.0277 -2.2990 34 1 1.8615 0.8794 -2.5851 35 1 0.2884 0.6893 -5.9100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692044231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:50 Heat of formation + Delta-G solvation = -87.764066 kcal Electronic energy + Delta-G solvation = -14954.260427 eV Core-core repulsion = 12564.423104 eV Total energy + Delta-G solvation = -2389.837323 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35603 -37.75253 -35.39550 -34.08031 -33.26194 -29.25447 -28.73934 -25.80839 -24.83127 -23.18163 -21.41866 -20.55526 -18.51992 -18.16980 -16.87918 -16.34486 -15.94598 -15.91846 -15.11472 -15.04835 -14.62297 -14.21326 -13.89352 -13.47420 -13.27220 -12.97159 -12.78722 -12.64077 -12.52534 -12.38695 -12.07720 -11.79552 -11.58613 -11.50574 -11.09073 -10.96973 -10.74454 -10.56553 -8.97697 -8.20134 -6.29694 1.39771 1.41471 1.52296 2.39716 3.05843 3.13559 3.59510 3.85747 3.94952 3.98874 4.27680 4.36968 4.48980 4.53721 4.56909 4.68042 4.73909 4.79810 4.93920 5.00675 5.03276 5.13514 5.20473 5.24428 5.32610 5.34507 5.44612 5.54434 5.67509 6.08579 6.39902 6.70624 6.86993 6.95837 7.39637 8.90845 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.009228 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.627855 B = 3033.565282 C = 3820.687279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.019 0.981 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.081 4.081 7 H 0.066 0.934 8 C 0.089 3.911 9 O -0.584 6.584 10 C 0.076 3.924 11 N -0.539 5.539 12 C 0.204 3.796 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.264 1.264 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.396 0.604 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.020 0.980 34 H -0.046 1.046 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -2.180 11.382 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 H 0.037 0.963 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.100 4.100 7 H 0.085 0.915 8 C 0.010 3.990 9 O -0.393 6.393 10 C -0.052 4.052 11 N -0.264 5.264 12 C 0.078 3.922 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.038 0.962 34 H -0.028 1.028 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.019 -2.647 11.409 13.654 hybrid contribution 0.690 0.793 -1.441 1.783 sum 7.709 -1.854 9.968 12.737 Atomic orbital electron populations 1.21819 0.94422 1.01755 1.01481 1.21731 0.95796 0.94645 0.91414 0.96293 1.21602 0.95622 1.00905 0.95873 1.21501 0.95263 1.00105 0.97095 1.21110 0.93986 1.00094 0.94830 0.91517 1.22028 0.92853 0.94540 0.89548 1.86409 1.27517 1.73014 1.52321 1.21798 0.88119 0.97316 0.97972 1.61980 1.06687 1.55214 1.02531 1.19456 0.94397 0.91328 0.87001 1.21481 1.33980 1.08043 0.92585 0.92178 1.25898 0.94995 0.96739 1.02010 1.70087 1.38112 1.25549 1.23772 0.85411 0.78967 0.78439 0.77979 1.19915 1.20692 1.18864 0.92748 0.89870 0.94728 0.89519 0.91803 0.90427 0.92342 0.93328 0.92688 0.75398 0.96763 0.92087 0.96182 1.02815 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.53 71.98 0.61 -4.25 16 2 C 0.07 2.70 2.44 44.94 0.11 2.81 16 3 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 4 C -0.10 -3.01 5.37 30.65 0.16 -2.84 16 5 C -0.10 -2.88 5.15 30.67 0.16 -2.72 16 6 C -0.08 -2.60 2.59 -10.74 -0.03 -2.62 16 7 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 8 C 0.09 2.27 6.43 71.98 0.46 2.73 16 9 O -0.58 -13.46 13.25 -148.98 -1.97 -15.43 16 10 C 0.08 3.06 4.58 86.33 0.40 3.46 16 11 N -0.54 -24.19 4.48 -875.66 -3.92 -28.11 16 12 C 0.20 11.17 4.45 85.55 0.38 11.55 16 13 C -0.52 -30.26 8.43 25.60 0.22 -30.04 16 14 H 0.06 3.43 7.17 -2.91 -0.02 3.41 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 17 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 22 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 23 H 0.03 1.38 6.55 -2.39 -0.02 1.36 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.01 7.90 -2.39 -0.02 1.99 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.40 5.01 9.12 -74.06 -0.68 4.34 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 2.68 6.75 -2.39 -0.02 2.66 16 33 H 0.02 1.17 5.79 -2.39 -0.01 1.16 16 34 H -0.05 -2.75 8.12 -2.38 -0.02 -2.77 16 35 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -66.83 276.43 -0.27 -67.11 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.38 Total: 7.64 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 2.94 Total: -21.39 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -3.64 Total: -84.83 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -1.97 Total: -15.43 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.83 -0.27 -67.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.659 kcal (2) G-P(sol) polarization free energy of solvation -66.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds