Wall clock time and date at job start Mon Mar 30 2020 04:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45180 * 2 1 4 4 C 1.53166 * 109.45085 * 119.94877 * 2 1 3 5 5 C 1.53120 * 109.20873 * 60.88230 * 4 2 1 6 6 C 1.53123 * 109.21163 * 57.62805 * 5 4 2 7 7 H 1.08996 * 109.50077 * 62.25431 * 6 5 4 8 8 C 1.52995 * 109.50232 * 182.37525 * 6 5 4 9 9 O 1.42904 * 109.46935 * 294.99812 * 8 6 5 10 10 C 1.53037 * 109.27398 * 302.31409 * 6 5 4 11 11 N 1.46845 * 109.46170 * 240.03261 * 2 1 3 12 12 C 1.46900 * 111.00045 * 65.82164 * 11 2 1 13 13 C 1.50700 * 109.47456 * 169.74895 * 12 11 2 14 14 H 1.08002 * 119.99391 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00581 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99512 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00421 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47070 * 90.00302 * 17 15 13 19 19 H 1.48503 * 109.47343 * 210.00088 * 17 15 13 20 20 H 1.48497 * 109.47245 * 330.00266 * 17 15 13 21 21 H 1.08997 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46881 * 299.96986 * 1 2 3 23 23 H 1.08998 * 109.47042 * 59.96423 * 1 2 3 24 24 H 1.09004 * 109.59002 * 300.93612 * 4 2 1 25 25 H 1.08997 * 109.49280 * 180.77472 * 4 2 1 26 26 H 1.09002 * 109.52427 * 297.69078 * 5 4 2 27 27 H 1.08995 * 109.52208 * 177.56397 * 5 4 2 28 28 H 1.08999 * 109.47348 * 54.99609 * 8 6 5 29 29 H 1.09001 * 109.47063 * 175.00518 * 8 6 5 30 30 H 0.96705 * 113.99700 * 180.02562 * 9 8 6 31 31 H 1.09006 * 109.45986 * 179.19524 * 10 6 5 32 32 H 1.08996 * 109.46288 * 299.15727 * 10 6 5 33 33 H 1.09004 * 109.47213 * 289.74248 * 12 11 2 34 34 H 1.08999 * 109.47347 * 49.74397 * 12 11 2 35 35 H 0.97007 * 119.99940 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0401 -0.7210 1.2514 5 6 1.5444 -2.1697 1.2354 6 6 2.0269 -2.8532 -0.0470 7 1 3.1166 -2.8750 -0.0598 8 6 1.4858 -4.2833 -0.0983 9 8 2.0505 -5.0448 0.9711 10 6 1.5173 -2.0703 -1.2592 11 7 2.0193 -0.6916 -1.1994 12 6 1.6651 0.0508 -2.4165 13 6 2.3898 -0.5437 -3.5965 14 1 3.0480 -1.3884 -3.4562 15 6 2.2125 -0.0094 -4.8551 16 7 1.4113 1.0195 -5.0258 17 14 3.1114 -0.7459 -6.3176 18 1 2.2771 -1.8140 -6.9247 19 1 3.3689 0.3139 -7.3254 20 1 4.4026 -1.3233 -5.8654 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8903 23 1 -0.3633 0.5144 -0.8897 24 1 1.6640 -0.2176 2.1421 25 1 3.1299 -0.7094 1.2590 26 1 0.4549 -2.1823 1.2671 27 1 1.9401 -2.6996 2.1017 28 1 0.4006 -4.2651 0.0023 29 1 1.7549 -4.7397 -1.0508 30 1 1.7514 -5.9640 1.0000 31 1 1.8711 -2.5463 -2.1738 32 1 0.4274 -2.0607 -1.2533 33 1 0.5894 -0.0131 -2.5811 34 1 1.9536 1.0957 -2.3017 35 1 1.2863 1.3952 -5.9114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692044232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:53 Heat of formation + Delta-G solvation = -85.732834 kcal Electronic energy + Delta-G solvation = -15066.288463 eV Core-core repulsion = 12676.539221 eV Total energy + Delta-G solvation = -2389.749242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63041 -37.72809 -35.42500 -33.84221 -33.04455 -29.31750 -28.34854 -26.16929 -25.25223 -23.13975 -21.93913 -19.58082 -18.50305 -18.05813 -17.13597 -16.35038 -15.90775 -15.79320 -15.44272 -15.01681 -14.33808 -14.09981 -13.80583 -13.53792 -13.45625 -13.28516 -12.93866 -12.65337 -12.45134 -12.16892 -12.04514 -11.89577 -11.52342 -11.38024 -11.05175 -10.99475 -10.73385 -10.60237 -8.89878 -8.20337 -6.30464 1.39483 1.41227 1.52960 2.39688 3.08351 3.14546 3.63578 3.82957 3.97315 4.06160 4.30552 4.31881 4.49599 4.56157 4.61436 4.64122 4.74088 4.81430 4.88979 4.99026 5.03931 5.12377 5.17011 5.25089 5.30131 5.35705 5.46919 5.61049 5.67662 6.08017 6.40998 6.72094 6.86872 6.96942 7.39289 8.90427 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.009025 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.499525 B = 3101.740874 C = 3742.587193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 H 0.061 0.939 4 C -0.102 4.102 5 C -0.101 4.101 6 C -0.081 4.081 7 H 0.063 0.937 8 C 0.088 3.912 9 O -0.585 6.585 10 C 0.075 3.925 11 N -0.541 5.541 12 C 0.212 3.788 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.028 0.972 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.396 0.604 31 H 0.057 0.943 32 H 0.025 0.975 33 H -0.032 1.032 34 H -0.002 1.002 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 -9.017 11.323 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 H 0.079 0.921 4 C -0.140 4.140 5 C -0.138 4.138 6 C -0.100 4.100 7 H 0.081 0.919 8 C 0.010 3.990 9 O -0.393 6.393 10 C -0.053 4.053 11 N -0.264 5.264 12 C 0.085 3.915 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.246 0.754 31 H 0.076 0.924 32 H 0.043 0.957 33 H -0.014 1.014 34 H 0.016 0.984 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.026 -8.348 11.344 14.122 hybrid contribution -0.865 -0.265 -1.414 1.679 sum -1.891 -8.614 9.929 13.280 Atomic orbital electron populations 1.22383 0.97498 1.02049 1.01497 1.21818 0.93165 0.97599 0.91287 0.92052 1.21578 1.00734 0.95725 0.95927 1.21510 1.00537 0.94924 0.96869 1.21107 1.00647 0.93268 0.95019 0.91870 1.22038 0.96726 0.90799 0.89442 1.86417 1.72638 1.28125 1.52124 1.21796 0.96402 0.89481 0.97671 1.62067 1.59554 1.02319 1.02496 1.19304 0.92584 0.92454 0.87116 1.21494 1.26571 1.15638 0.92517 0.92156 1.25907 0.96263 0.95422 1.02070 1.70091 1.38782 1.24896 1.23736 0.85405 0.79036 0.78058 0.78268 1.19651 1.20701 1.19057 0.91911 0.90295 0.95232 0.89534 0.92264 0.91654 0.90786 0.92552 0.93406 0.75435 0.92425 0.95665 1.01392 0.98402 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.89 8.18 71.98 0.59 -5.30 16 2 C 0.07 2.57 2.92 44.98 0.13 2.70 16 3 H 0.06 2.37 8.01 -2.39 -0.02 2.35 16 4 C -0.10 -2.97 5.63 30.69 0.17 -2.80 16 5 C -0.10 -2.78 4.84 30.68 0.15 -2.63 16 6 C -0.08 -2.56 2.59 -10.74 -0.03 -2.59 16 7 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 8 C 0.09 2.22 6.43 71.98 0.46 2.68 16 9 O -0.58 -13.35 13.24 -148.98 -1.97 -15.32 16 10 C 0.07 2.93 4.28 86.33 0.37 3.30 16 11 N -0.54 -24.09 4.59 -875.39 -4.02 -28.11 16 12 C 0.21 11.56 4.18 85.56 0.36 11.92 16 13 C -0.52 -30.35 8.43 25.60 0.22 -30.14 16 14 H 0.06 3.45 7.14 -2.91 -0.02 3.42 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 17 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H 0.06 2.00 4.80 -2.39 -0.01 1.99 16 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.03 1.15 6.78 -2.39 -0.02 1.13 16 24 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.69 6.56 -2.39 -0.02 1.67 16 27 H 0.07 1.90 7.89 -2.39 -0.02 1.88 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.40 4.94 9.12 -74.05 -0.68 4.27 16 31 H 0.06 2.50 6.72 -2.38 -0.02 2.49 16 32 H 0.03 0.98 6.19 -2.39 -0.01 0.97 16 33 H -0.03 -1.85 6.97 -2.38 -0.02 -1.86 16 34 H 0.00 -0.13 7.98 -2.39 -0.02 -0.15 16 35 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -66.78 270.24 -0.41 -67.19 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.39 Total: 8.41 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 2.88 Total: -22.32 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.74 Total: -84.87 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.97 Total: -15.32 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.78 -0.41 -67.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.545 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds