Wall clock time and date at job start Mon Mar 30 2020 04:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.45621 * 2 1 4 4 C 1.53040 * 109.46385 * 240.02491 * 2 1 3 5 5 C 1.53119 * 109.28089 * 299.16605 * 4 2 1 6 6 C 1.53124 * 109.15841 * 302.34776 * 5 4 2 7 7 H 1.08999 * 109.49853 * 297.70868 * 6 5 4 8 8 C 1.53002 * 109.53203 * 177.61457 * 6 5 4 9 9 O 1.42899 * 109.46965 * 65.17464 * 8 6 5 10 10 C 1.53032 * 109.28012 * 57.65244 * 6 5 4 11 11 N 1.46846 * 109.52260 * 300.82015 * 10 6 5 12 12 C 1.46902 * 111.00204 * 185.84105 * 11 10 6 13 13 C 1.50705 * 109.47245 * 66.04321 * 12 11 10 14 14 H 1.07998 * 119.99574 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00315 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99854 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99744 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.46701 * 90.00124 * 17 15 13 19 19 H 1.48495 * 109.46908 * 209.99820 * 17 15 13 20 20 H 1.48495 * 109.46986 * 329.99798 * 17 15 13 21 21 H 1.09000 * 109.47157 * 300.02727 * 1 2 3 22 22 H 1.09003 * 109.46781 * 60.02406 * 1 2 3 23 23 H 1.08992 * 109.47370 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.50602 * 179.22364 * 4 2 1 25 25 H 1.09001 * 109.53370 * 59.13203 * 4 2 1 26 26 H 1.08998 * 109.52394 * 182.44064 * 5 4 2 27 27 H 1.09003 * 109.56984 * 62.28008 * 5 4 2 28 28 H 1.08998 * 109.46921 * 185.17461 * 8 6 5 29 29 H 1.09000 * 109.47047 * 305.17369 * 8 6 5 30 30 H 0.96701 * 113.99372 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46314 * 180.80749 * 10 6 5 32 32 H 1.08997 * 109.46418 * 60.83870 * 10 6 5 33 33 H 1.09001 * 109.47344 * 186.04531 * 12 11 10 34 34 H 1.09004 * 109.47104 * 306.04740 * 12 11 10 35 35 H 0.97003 * 119.99512 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.5443 -2.1696 -1.2356 6 6 2.0268 -2.8532 0.0468 7 1 3.1165 -2.8751 0.0595 8 6 1.4865 -4.2837 0.0984 9 8 2.0547 -5.0462 -0.9683 10 6 1.5173 -2.0705 1.2591 11 7 2.0192 -0.6918 1.1994 12 6 1.6651 0.0506 2.4165 13 6 2.3898 -0.5440 3.5964 14 1 3.0480 -1.3887 3.4561 15 6 2.2126 -0.0098 4.8551 16 7 2.8456 -0.5285 5.8847 17 14 1.0736 1.4507 5.0979 18 1 -0.3006 0.9648 5.3818 19 1 1.5549 2.2693 6.2396 20 1 1.0611 2.2790 3.8654 21 1 -0.3633 0.5143 0.8897 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 3.1299 -0.7093 -1.2576 25 1 1.6644 -0.2165 -2.1403 26 1 1.9409 -2.6989 -2.1020 27 1 0.4548 -2.1831 -1.2678 28 1 1.7531 -4.7386 1.0523 29 1 0.4016 -4.2662 -0.0052 30 1 1.7563 -5.9656 -0.9969 31 1 1.8711 -2.5465 2.1736 32 1 0.4274 -2.0608 1.2532 33 1 1.9536 1.0954 2.3017 34 1 0.5894 -0.0133 2.5810 35 1 2.7206 -0.1529 6.7702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692044234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:55 Heat of formation + Delta-G solvation = -58.255694 kcal Electronic energy + Delta-G solvation = -15103.558049 eV Core-core repulsion = 12715.000305 eV Total energy + Delta-G solvation = -2388.557744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.26817 -36.63907 -33.60427 -32.27796 -31.56405 -28.02498 -27.01981 -24.78766 -23.53499 -21.29434 -20.43420 -18.27767 -17.04900 -16.77384 -15.50752 -14.84683 -14.52660 -14.33033 -13.92380 -13.50819 -12.93768 -12.65340 -12.40522 -12.31484 -12.10745 -11.83192 -11.41134 -10.97849 -10.73598 -10.68898 -10.52927 -10.13034 -9.99485 -9.80001 -9.76809 -9.55830 -9.20970 -8.56587 -7.28597 -6.04541 -4.01384 3.27824 3.35837 3.38171 4.28910 4.42435 4.87164 5.07649 5.20639 5.27676 5.28242 5.49229 5.57890 5.71416 5.71890 5.83468 5.92102 6.05723 6.10691 6.13446 6.25869 6.32409 6.37797 6.55385 6.58478 6.75540 6.78609 6.94101 7.06212 7.63070 7.71455 7.96982 8.12393 8.68557 9.04405 9.57608 11.08615 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.009147 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.604348 B = 3060.534869 C = 3587.844041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.075 3.925 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.085 4.085 7 H 0.083 0.917 8 C 0.081 3.919 9 O -0.574 6.574 10 C 0.069 3.931 11 N -0.519 5.519 12 C 0.162 3.838 13 C -0.508 4.508 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.373 0.627 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.028 0.972 34 H -0.014 1.014 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -3.814 -12.662 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.034 4.034 3 H 0.093 0.907 4 C -0.147 4.147 5 C -0.146 4.146 6 C -0.104 4.104 7 H 0.101 0.899 8 C 0.003 3.997 9 O -0.378 6.378 10 C -0.060 4.060 11 N -0.242 5.242 12 C 0.036 3.964 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.219 0.781 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.003 0.997 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.501 -3.220 -12.598 13.760 hybrid contribution -1.844 0.333 0.567 1.958 sum -6.345 -2.887 -12.032 13.905 Atomic orbital electron populations 1.22508 0.98748 1.01900 1.01390 1.21702 0.92047 0.98080 0.91587 0.90739 1.21577 1.01315 0.95340 0.96455 1.21553 0.99916 0.95534 0.97567 1.21199 1.01968 0.91615 0.95638 0.89884 1.22222 0.95987 0.92326 0.89172 1.86481 1.72193 1.26242 1.52911 1.21898 0.96397 0.90159 0.97498 1.61999 1.58683 1.01374 1.02130 1.20170 0.93942 0.94255 0.88006 1.21069 1.26954 1.16906 0.89744 0.90139 1.24900 0.95729 0.96767 0.95965 1.69898 1.42914 1.41662 0.99527 0.86874 0.81320 0.83562 0.78072 1.20423 1.21161 1.19176 0.92625 0.93100 0.92271 0.91355 0.92428 0.91993 0.92701 0.93345 0.94126 0.78105 0.89404 0.95689 0.95406 0.99673 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 8.18 37.16 0.30 -2.66 16 2 C 0.08 1.31 2.92 -67.72 -0.20 1.11 16 3 H 0.07 1.31 8.01 -51.93 -0.42 0.89 16 4 C -0.11 -1.63 5.61 -26.65 -0.15 -1.78 16 5 C -0.11 -1.59 4.85 -26.61 -0.13 -1.72 16 6 C -0.09 -1.39 2.59 -90.54 -0.23 -1.62 16 7 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 8 C 0.08 1.11 6.43 37.16 0.24 1.35 16 9 O -0.57 -7.42 13.25 -35.23 -0.47 -7.89 16 10 C 0.07 1.32 4.28 -3.84 -0.02 1.30 16 11 N -0.52 -10.93 4.59 -228.12 -1.05 -11.97 16 12 C 0.16 3.95 3.25 -4.97 -0.02 3.94 16 13 C -0.51 -14.46 8.98 -34.44 -0.31 -14.77 16 14 H 0.08 2.49 7.38 -52.49 -0.39 2.10 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 17 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 21 H 0.05 0.96 6.78 -51.93 -0.35 0.60 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.92 4.80 -51.93 -0.25 0.67 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 27 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.37 2.97 9.12 45.56 0.42 3.38 16 31 H 0.09 1.90 6.72 -51.93 -0.35 1.55 16 32 H 0.03 0.47 6.19 -51.93 -0.32 0.14 16 33 H 0.03 0.69 7.04 -51.93 -0.37 0.33 16 34 H -0.01 -0.35 6.39 -51.93 -0.33 -0.68 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 266.65 15.07 4.02 4.02 Total: -1.00 -31.15 266.65 -6.81 -37.96 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.81 Total: 0.78 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.61 Total: -12.97 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.27 Total: -38.84 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.47 Total: -7.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.15 -6.81 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.293 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds