Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.08998 * 109.47684 * 305.00010 * 3 2 1 5 5 N 1.46899 * 109.47308 * 65.00191 * 3 2 1 6 6 C 1.53009 * 109.47085 * 184.99628 * 3 2 1 7 7 O 1.42893 * 109.46953 * 175.64253 * 6 3 2 8 8 C 1.42900 * 113.99813 * 175.06018 * 7 6 3 9 9 C 1.53000 * 109.47312 * 184.94097 * 8 7 6 10 10 C 1.50698 * 115.55486 * 294.89741 * 9 8 7 11 11 H 1.08006 * 120.00182 * 95.10372 * 10 9 8 12 12 C 1.37880 * 119.99934 * 275.11407 * 10 9 8 13 13 N 1.31511 * 120.00282 * 5.28413 * 12 10 9 14 14 Si 1.86801 * 119.99894 * 185.28604 * 12 10 9 15 15 H 1.48511 * 109.46937 * 59.99858 * 14 12 10 16 16 H 1.48493 * 109.47149 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47378 * 300.00268 * 14 12 10 18 18 C 1.53004 * 117.49858 * 149.22550 * 9 8 7 19 19 C 1.53008 * 117.49736 * 80.56724 * 9 8 7 20 20 H 1.09003 * 109.47620 * 300.00172 * 1 2 3 21 21 H 1.09007 * 109.47442 * 60.00001 * 1 2 3 22 22 H 1.08998 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47311 * 240.00272 * 2 1 3 24 24 H 1.09000 * 109.46819 * 120.00084 * 2 1 3 25 25 H 1.00900 * 111.00200 * 65.14247 * 5 3 2 26 26 H 1.00890 * 111.00377 * 189.10357 * 5 3 2 27 27 H 1.09004 * 109.46518 * 55.64905 * 6 3 2 28 28 H 1.08996 * 109.47171 * 295.64824 * 6 3 2 29 29 H 1.09003 * 109.47711 * 304.94408 * 8 7 6 30 30 H 1.09001 * 109.47031 * 64.94624 * 8 7 6 31 31 H 0.96995 * 120.00310 * 185.00455 * 13 12 10 32 32 H 1.08994 * 117.50088 * 359.97438 * 18 9 8 33 33 H 1.08996 * 117.49989 * 145.02559 * 18 9 8 34 34 H 1.08991 * 117.49640 * 214.98196 * 19 9 8 35 35 H 1.08997 * 117.49496 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6513 2.0993 1.2552 6 6 3.5648 1.4443 -0.1256 7 8 4.0327 2.7906 -0.2277 8 6 5.4565 2.9120 -0.2378 9 6 5.8423 4.3924 -0.2253 10 6 5.4427 5.1787 -1.4473 11 1 4.5186 5.7379 -1.4512 12 6 6.2565 5.1840 -2.5602 13 7 7.3277 4.4220 -2.5952 14 14 5.8374 6.2737 -4.0185 15 1 5.8136 7.6938 -3.5846 16 1 6.8622 6.0976 -5.0786 17 1 4.5035 5.8965 -4.5512 18 6 7.1544 4.7748 0.4627 19 6 5.8159 5.1181 1.1215 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 2.1090 1.6694 2.0451 26 1 1.8441 3.0890 1.2203 27 1 3.8565 0.8897 -1.0176 28 1 4.0025 0.9733 0.7545 29 1 5.8693 2.4215 0.6439 30 1 5.8550 2.4402 -1.1360 31 1 7.9392 4.4789 -3.3461 32 1 7.7424 3.9718 0.9069 33 1 7.7282 5.5952 0.0318 34 1 5.5097 6.1641 1.1235 35 1 5.5232 4.5408 1.9984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693777958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = -58.897424 kcal Electronic energy + Delta-G solvation = -14526.067042 eV Core-core repulsion = 12137.481470 eV Total energy + Delta-G solvation = -2388.585572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55658 -38.09931 -36.34600 -34.00100 -31.95936 -29.18823 -27.79827 -26.76447 -23.99184 -22.91520 -21.61847 -20.97261 -18.22642 -17.51444 -16.99327 -16.70170 -16.17290 -16.08317 -15.39560 -15.18472 -14.56292 -14.06948 -13.71381 -13.47515 -13.07345 -12.89977 -12.85682 -12.63267 -12.36236 -12.24117 -12.03421 -11.80365 -11.65391 -11.37659 -10.90548 -10.47328 -10.38987 -10.03402 -9.57033 -8.12762 -6.22769 1.40453 1.41293 1.48930 2.42070 2.76111 3.16409 3.54224 3.70757 4.00588 4.20240 4.24022 4.28336 4.42162 4.48567 4.52298 4.58512 4.71420 4.80981 4.87524 4.92120 4.97304 5.04584 5.16980 5.20605 5.35743 5.53575 5.59523 5.59859 5.76556 6.24286 6.35537 6.53350 6.62425 6.81540 7.44842 8.95920 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031451 B = 0.007659 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.052140 B = 3655.017761 C = 4119.010510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.100 3.900 4 H 0.067 0.933 5 N -0.832 5.832 6 C 0.020 3.980 7 O -0.390 6.390 8 C 0.124 3.876 9 C 0.008 3.992 10 C -0.500 4.500 11 H 0.046 0.954 12 C 0.024 3.976 13 N -0.911 5.911 14 Si 0.948 3.052 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.275 1.275 18 C -0.152 4.152 19 C -0.181 4.181 20 H 0.060 0.940 21 H 0.044 0.956 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.341 0.659 26 H 0.344 0.656 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.020 0.980 31 H 0.260 0.740 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -7.422 5.894 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.013 4.013 4 H 0.086 0.914 5 N -0.361 5.361 6 C -0.058 4.058 7 O -0.310 6.310 8 C 0.048 3.952 9 C 0.008 3.992 10 C -0.538 4.538 11 H 0.064 0.936 12 C -0.176 4.176 13 N -0.549 5.549 14 Si 0.773 3.227 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.201 1.201 18 C -0.190 4.190 19 C -0.218 4.218 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.504 -7.603 5.556 12.689 hybrid contribution 1.513 0.648 -0.944 1.897 sum -6.992 -6.955 4.612 10.887 Atomic orbital electron populations 1.21599 0.94308 1.01547 1.02041 1.21443 0.97388 0.93278 1.02450 1.21454 0.89306 0.96909 0.93622 0.91438 1.58994 1.64967 1.08343 1.03756 1.23559 0.97897 0.84488 0.99890 1.87881 1.22109 1.26158 1.94840 1.21831 0.79814 0.96783 0.96801 1.18900 0.97857 0.91049 0.91392 1.20617 1.06251 1.29086 0.97802 0.93587 1.25641 0.95440 0.96295 1.00231 1.70083 1.13838 1.38485 1.32482 0.85780 0.77853 0.79709 0.79325 1.19598 1.20723 1.20084 1.22448 0.90583 1.01965 1.03965 1.22946 1.01427 1.00583 0.96837 0.92105 0.93638 0.91839 0.91314 0.91079 0.84608 0.84371 0.94367 0.93026 0.94942 0.96124 0.93067 0.90388 0.91813 0.90455 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.80 71.98 0.71 -2.03 16 2 C -0.11 -2.32 5.61 30.59 0.17 -2.15 16 3 C 0.10 2.75 3.04 44.92 0.14 2.89 16 4 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 5 N -0.83 -21.50 8.66 -168.67 -1.46 -22.97 16 6 C 0.02 0.67 5.49 71.99 0.40 1.06 16 7 O -0.39 -16.69 10.03 -148.98 -1.49 -18.18 16 8 C 0.12 5.76 5.77 71.98 0.41 6.18 16 9 C 0.01 0.42 1.60 -52.92 -0.08 0.34 16 10 C -0.50 -28.26 8.76 25.60 0.22 -28.04 16 11 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 12 C 0.02 1.32 5.40 84.66 0.46 1.78 16 13 N -0.91 -52.58 12.90 21.45 0.28 -52.30 16 14 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 C -0.15 -7.12 9.41 30.62 0.29 -6.83 16 19 C -0.18 -7.81 9.96 30.62 0.30 -7.51 16 20 H 0.06 1.28 7.75 -2.39 -0.02 1.27 16 21 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.34 7.77 8.97 -89.69 -0.80 6.97 16 26 H 0.34 9.89 8.86 -89.70 -0.80 9.10 16 27 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.05 1.51 8.12 -2.39 -0.02 1.49 16 29 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 32 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -60.30 294.77 1.82 -58.48 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.54 Total: 22.90 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.01 Total: -34.31 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -1.18 Total: -75.27 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.49 Total: -18.18 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.30 1.82 -58.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693777958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.418 kcal (2) G-P(sol) polarization free energy of solvation -60.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds