Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 H 1.08999 * 109.46880 * 55.00281 * 3 2 1 5 5 N 1.46898 * 109.47042 * 294.99882 * 3 2 1 6 6 C 1.53000 * 109.46947 * 174.99855 * 3 2 1 7 7 O 1.42896 * 109.47074 * 184.99775 * 6 3 2 8 8 C 1.42902 * 114.00055 * 179.97438 * 7 6 3 9 9 C 1.53002 * 109.47362 * 180.02562 * 8 7 6 10 10 C 1.50697 * 115.55145 * 294.89537 * 9 8 7 11 11 H 1.08002 * 120.00140 * 94.74461 * 10 9 8 12 12 C 1.37876 * 119.99980 * 275.02297 * 10 9 8 13 13 N 1.31515 * 120.00112 * 6.36060 * 12 10 9 14 14 Si 1.86801 * 119.99835 * 186.36380 * 12 10 9 15 15 H 1.48500 * 109.47152 * 90.00188 * 14 12 10 16 16 H 1.48501 * 109.46889 * 209.99717 * 14 12 10 17 17 H 1.48499 * 109.47466 * 329.99608 * 14 12 10 18 18 C 1.53002 * 117.49474 * 80.56117 * 9 8 7 19 19 C 1.52999 * 117.49875 * 149.22099 * 9 8 7 20 20 H 1.08996 * 109.47236 * 59.99701 * 1 2 3 21 21 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47423 * 299.99782 * 1 2 3 23 23 H 1.09000 * 109.47423 * 240.00218 * 2 1 3 24 24 H 1.09001 * 109.47112 * 119.99831 * 2 1 3 25 25 H 1.00900 * 110.99838 * 300.00123 * 5 3 2 26 26 H 1.00901 * 110.99835 * 63.95987 * 5 3 2 27 27 H 1.09003 * 109.47069 * 65.00434 * 6 3 2 28 28 H 1.09001 * 109.47352 * 305.00086 * 6 3 2 29 29 H 1.09003 * 109.46730 * 60.00743 * 8 7 6 30 30 H 1.08996 * 109.47771 * 300.00332 * 8 7 6 31 31 H 0.96994 * 120.00180 * 179.97438 * 13 12 10 32 32 H 1.09000 * 117.49608 * 215.00642 * 18 9 8 33 33 H 1.08995 * 117.50293 * 0.02592 * 18 9 8 34 34 H 1.08999 * 117.50013 * 359.97438 * 19 9 8 35 35 H 1.08997 * 117.49709 * 144.97897 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6513 2.0993 -1.2552 6 6 3.5648 1.4444 0.1258 7 8 4.0314 2.7899 0.2428 8 6 5.4504 2.9042 0.3670 9 6 5.8348 4.3804 0.4856 10 6 5.5477 5.2263 -0.7281 11 1 4.6257 5.7852 -0.7910 12 6 6.4595 5.2822 -1.7608 13 7 7.5191 4.5034 -1.7454 14 14 6.1899 6.4644 -3.1818 15 1 6.8349 7.7657 -2.8724 16 1 6.7873 5.8974 -4.4175 17 1 4.7333 6.6697 -3.3854 18 6 5.6873 5.0407 1.8578 19 6 7.0796 4.7226 1.3068 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0422 1.6179 -2.0512 26 1 0.6476 2.1684 -1.3314 27 1 4.0029 0.9836 -0.7596 28 1 3.8570 0.8800 1.0114 29 1 5.9280 2.4736 -0.5132 30 1 5.7815 2.3704 1.2578 31 1 8.1604 4.5424 -2.4720 32 1 5.3826 6.0870 1.8827 33 1 5.3169 4.4235 2.6762 34 1 7.6244 3.8961 1.7629 35 1 7.6910 5.5593 0.9689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693777959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = -55.530475 kcal Electronic energy + Delta-G solvation = -14529.950945 eV Core-core repulsion = 12141.511375 eV Total energy + Delta-G solvation = -2388.439570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.42917 -38.13018 -36.48684 -33.95389 -31.66067 -29.44725 -27.79260 -26.70785 -23.98696 -22.87768 -21.61097 -20.93350 -18.14258 -17.48225 -17.01640 -16.69813 -16.21676 -15.64107 -15.53713 -14.95637 -14.92357 -14.28901 -13.61395 -13.46658 -13.08751 -12.86963 -12.81485 -12.52107 -12.38601 -12.29889 -12.04337 -11.83172 -11.62838 -11.32959 -10.84335 -10.41140 -10.25985 -9.95045 -9.43178 -8.08212 -6.16119 1.42013 1.42475 1.53928 2.46371 2.87428 3.21247 3.59255 3.69343 4.03682 4.11067 4.17977 4.33710 4.39942 4.53259 4.57144 4.63556 4.66672 4.77228 4.88327 4.92981 4.97669 5.01580 5.07880 5.23345 5.26583 5.34421 5.62637 5.66985 5.81597 6.33717 6.45295 6.70715 6.71602 6.86999 7.50313 9.01081 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.008015 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.546475 B = 3492.787799 C = 4060.113264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.101 3.899 4 H 0.077 0.923 5 N -0.848 5.848 6 C 0.059 3.941 7 O -0.381 6.381 8 C 0.121 3.879 9 C 0.009 3.991 10 C -0.494 4.494 11 H 0.042 0.958 12 C 0.024 3.976 13 N -0.911 5.911 14 Si 0.950 3.050 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C -0.185 4.185 19 C -0.151 4.151 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.340 0.660 26 H 0.347 0.653 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.259 0.741 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 -9.081 3.236 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C -0.011 4.011 4 H 0.095 0.905 5 N -0.380 5.380 6 C -0.018 4.018 7 O -0.300 6.300 8 C 0.045 3.955 9 C 0.009 3.991 10 C -0.532 4.532 11 H 0.061 0.939 12 C -0.176 4.176 13 N -0.550 5.550 14 Si 0.775 3.225 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.222 4.222 19 C -0.189 4.189 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.162 0.838 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.566 -8.320 3.409 13.129 hybrid contribution 0.008 -0.527 -1.106 1.225 sum -9.558 -8.848 2.303 13.227 Atomic orbital electron populations 1.21749 0.94122 1.02612 1.02145 1.22218 0.97549 0.96019 1.03095 1.21385 0.92507 0.93643 0.93553 0.90521 1.58645 1.16362 1.59272 1.03724 1.22668 0.95264 0.84571 0.99282 1.88003 1.21716 1.26012 1.94224 1.21818 0.80563 0.96547 0.96601 1.18912 0.98350 0.91514 0.90349 1.20579 1.03465 1.26986 1.02206 0.93933 1.25626 0.95055 0.96892 0.99996 1.70098 1.12843 1.38711 1.33328 0.85691 0.78205 0.79488 0.79069 1.19946 1.20738 1.19882 1.22948 1.00326 1.00664 0.98246 1.22448 0.90432 1.01704 1.04274 0.92523 0.91249 0.92371 0.91614 0.90648 0.84685 0.83810 0.94888 0.92588 0.96103 0.95168 0.93172 0.90567 0.89237 0.90283 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.68 71.98 0.70 -1.67 16 2 C -0.15 -2.93 5.58 30.59 0.17 -2.76 16 3 C 0.10 2.81 3.08 44.92 0.14 2.94 16 4 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 5 N -0.85 -24.71 9.13 -168.68 -1.54 -26.26 16 6 C 0.06 2.05 5.53 71.98 0.40 2.45 16 7 O -0.38 -17.50 10.22 -148.98 -1.52 -19.02 16 8 C 0.12 5.90 5.76 71.98 0.41 6.31 16 9 C 0.01 0.48 1.60 -52.93 -0.08 0.40 16 10 C -0.49 -29.03 8.76 25.60 0.22 -28.80 16 11 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 12 C 0.02 1.36 5.39 84.65 0.46 1.81 16 13 N -0.91 -53.65 12.94 21.45 0.28 -53.37 16 14 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 15 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 18 C -0.18 -8.42 9.96 30.62 0.30 -8.12 16 19 C -0.15 -7.32 9.44 30.62 0.29 -7.03 16 20 H 0.06 0.87 6.87 -2.39 -0.02 0.85 16 21 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.34 9.37 9.00 -89.69 -0.81 8.56 16 26 H 0.35 8.16 7.55 -89.69 -0.68 7.49 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.06 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -65.37 293.27 1.82 -63.54 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.43 Total: 21.95 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.01 Total: -34.47 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.26 Total: -79.63 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.52 Total: -19.02 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -65.37 1.82 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693777959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.012 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds