Wall clock time and date at job start Mon Mar 30 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.62936 * 333.10080 * 5 4 3 7 7 C 1.55134 * 110.70552 * 96.39881 * 5 4 3 8 8 C 1.54913 * 101.65285 * 154.03296 * 7 5 4 9 9 N 1.47839 * 104.79490 * 322.93171 * 8 7 5 10 10 C 1.46901 * 111.00000 * 146.36178 * 9 8 7 11 11 C 1.50703 * 109.47265 * 69.15583 * 10 9 8 12 12 H 1.08000 * 119.99747 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00095 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00144 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99867 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47306 * 89.99508 * 15 13 11 17 17 H 1.48496 * 109.47345 * 209.99858 * 15 13 11 18 18 H 1.48497 * 109.47499 * 329.99622 * 15 13 11 19 19 C 1.47439 * 108.56885 * 24.09401 * 9 8 7 20 20 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 22 22 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 23 23 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 24 24 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 25 25 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 26 26 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 27 27 H 1.09003 * 110.99604 * 272.12148 * 7 5 4 28 28 H 1.09006 * 110.99499 * 35.94600 * 7 5 4 29 29 H 1.08996 * 110.37511 * 204.09723 * 8 7 5 30 30 H 1.09007 * 110.46370 * 81.81114 * 8 7 5 31 31 H 1.09004 * 109.47522 * 189.15294 * 10 9 8 32 32 H 1.09000 * 109.47071 * 309.15767 * 10 9 8 33 33 H 0.97004 * 120.00123 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.88557 * 239.60555 * 19 9 8 35 35 H 1.09004 * 110.02359 * 118.49307 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 1 3.3752 3.4686 -0.4627 7 6 4.4218 3.1836 1.4406 8 6 5.5694 4.1903 1.1773 9 7 6.3178 3.6199 0.0371 10 6 6.8612 4.6819 -0.8201 11 6 7.9580 5.4087 -0.0853 12 1 8.2244 5.1116 0.9183 13 6 8.6206 6.4535 -0.6938 14 7 8.2958 6.8156 -1.9156 15 14 9.9805 7.3539 0.2168 16 1 11.2821 6.6942 -0.0592 17 1 10.0336 8.7651 -0.2423 18 1 9.7072 7.3181 1.6760 19 6 5.4140 2.7376 -0.7235 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.5791 3.6716 1.9304 28 1 4.7739 2.3346 2.0266 29 1 6.2137 4.2687 2.0530 30 1 5.1658 5.1684 0.9153 31 1 7.2647 4.2420 -1.7322 32 1 6.0678 5.3842 -1.0756 33 1 8.7618 7.5509 -2.3436 34 1 5.8153 1.7243 -0.7437 35 1 5.2975 3.1105 -1.7411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701708437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:22 Heat of formation + Delta-G solvation = -55.995614 kcal Electronic energy + Delta-G solvation = -14274.075028 eV Core-core repulsion = 11885.615288 eV Total energy + Delta-G solvation = -2388.459740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.89423 -36.78532 -33.75485 -32.73840 -30.28382 -28.22150 -26.42514 -25.50857 -22.52974 -21.62260 -20.63153 -19.89378 -16.94690 -16.20695 -15.83405 -15.42535 -14.62154 -14.08515 -13.84586 -13.45864 -13.17481 -12.66918 -12.44025 -12.34689 -11.95303 -11.64455 -11.41257 -11.23933 -11.00691 -10.85273 -10.78424 -10.61133 -10.39316 -10.28071 -9.80944 -9.35542 -9.10093 -8.42161 -7.23452 -6.01572 -4.02858 3.33718 3.39270 3.43235 3.73137 4.44611 4.81761 4.86706 4.94535 5.06798 5.17063 5.30646 5.35530 5.37007 5.38020 5.45744 5.61377 5.79011 5.84678 5.98331 6.00068 6.06459 6.13959 6.26799 6.45526 6.61882 6.64656 7.20442 7.30921 7.45601 7.82376 8.05586 8.20011 8.54063 9.05244 9.61575 11.09510 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.086699 B = 0.005165 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.877781 B = 5419.787638 C = 5567.664897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.061 3.939 4 O -0.378 6.378 5 C 0.069 3.931 6 H 0.063 0.937 7 C -0.151 4.151 8 C 0.059 3.941 9 N -0.523 5.523 10 C 0.186 3.814 11 C -0.506 4.506 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.046 3.954 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.031 0.969 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -9.157 3.959 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.296 6.296 5 C 0.010 3.990 6 H 0.081 0.919 7 C -0.189 4.189 8 C -0.069 4.069 9 N -0.249 5.249 10 C 0.061 3.939 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.082 4.082 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.010 0.990 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.721 -9.474 3.989 16.355 hybrid contribution -0.096 1.361 0.016 1.365 sum -12.817 -8.113 4.004 15.689 Atomic orbital electron populations 1.21698 0.95041 1.02000 1.01948 1.21458 0.95428 0.95937 1.03279 1.22543 0.81888 0.97405 0.99809 1.87903 1.18768 1.27972 1.94972 1.23481 0.95458 0.83821 0.96251 0.91898 1.23217 0.98737 1.00177 0.96774 1.22767 0.92981 0.95334 0.95825 1.63731 1.30404 1.21344 1.09440 1.19977 0.94332 0.87296 0.92317 1.21153 1.17525 1.14414 1.01376 0.91859 1.24997 0.97503 0.97172 0.95016 1.69959 1.42054 1.28934 1.13042 0.86477 0.82201 0.78672 0.79942 1.20595 1.21346 1.19843 1.22830 0.89586 0.99606 0.96205 0.92186 0.92623 0.92593 0.91173 0.91206 0.93684 0.93664 0.91811 0.90260 0.90687 0.93741 0.95115 0.98980 0.92935 0.90538 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.23 6.30 -26.73 -0.17 -1.40 16 3 C 0.06 0.73 5.78 37.16 0.21 0.94 16 4 O -0.38 -5.89 10.07 -35.23 -0.35 -6.24 16 5 C 0.07 1.14 3.44 -24.91 -0.09 1.05 16 6 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16 7 C -0.15 -2.45 6.80 -24.59 -0.17 -2.61 16 8 C 0.06 1.17 6.14 -2.30 -0.01 1.16 16 9 N -0.52 -11.88 5.15 -232.68 -1.20 -13.08 16 10 C 0.19 4.98 4.33 -4.97 -0.02 4.96 16 11 C -0.51 -14.53 8.80 -34.44 -0.30 -14.83 16 12 H 0.06 1.80 7.76 -52.49 -0.41 1.39 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 15 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.05 0.90 6.63 -2.84 -0.02 0.88 16 20 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.04 0.92 7.62 -51.93 -0.40 0.53 16 31 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 32 H -0.01 -0.21 7.85 -51.93 -0.41 -0.62 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.47 8.06 -51.92 -0.42 1.05 16 35 H 0.05 1.04 7.56 -51.93 -0.39 0.65 16 LS Contribution 287.37 15.07 4.33 4.33 Total: -1.00 -30.35 287.37 -8.01 -38.36 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -6.21 Total: -4.75 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.29 Total: -9.18 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.46 Total: -39.39 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.35 Total: -6.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.35 -8.01 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701708437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.636 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds