Wall clock time and date at job start Mon Mar 30 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.62936 * 333.10080 * 5 4 3 7 7 C 1.55134 * 110.70552 * 96.39881 * 5 4 3 8 8 C 1.54913 * 101.65285 * 154.03296 * 7 5 4 9 9 N 1.47839 * 104.79490 * 322.93171 * 8 7 5 10 10 C 1.46901 * 111.00000 * 146.36178 * 9 8 7 11 11 C 1.50703 * 109.47265 * 69.15583 * 10 9 8 12 12 H 1.08000 * 119.99747 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00095 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00144 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99867 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47306 * 89.99508 * 15 13 11 17 17 H 1.48496 * 109.47345 * 209.99858 * 15 13 11 18 18 H 1.48497 * 109.47499 * 329.99622 * 15 13 11 19 19 C 1.47439 * 108.56885 * 24.09401 * 9 8 7 20 20 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 22 22 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 23 23 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 24 24 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 25 25 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 26 26 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 27 27 H 1.09003 * 110.99604 * 272.12148 * 7 5 4 28 28 H 1.09006 * 110.99499 * 35.94600 * 7 5 4 29 29 H 1.08996 * 110.37511 * 204.09723 * 8 7 5 30 30 H 1.09007 * 110.46370 * 81.81114 * 8 7 5 31 31 H 1.09004 * 109.47522 * 189.15294 * 10 9 8 32 32 H 1.09000 * 109.47071 * 309.15767 * 10 9 8 33 33 H 0.97004 * 120.00123 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.88557 * 239.60555 * 19 9 8 35 35 H 1.09004 * 110.02359 * 118.49307 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 1 3.3752 3.4686 -0.4627 7 6 4.4218 3.1836 1.4406 8 6 5.5694 4.1903 1.1773 9 7 6.3178 3.6199 0.0371 10 6 6.8612 4.6819 -0.8201 11 6 7.9580 5.4087 -0.0853 12 1 8.2244 5.1116 0.9183 13 6 8.6206 6.4535 -0.6938 14 7 8.2958 6.8156 -1.9156 15 14 9.9805 7.3539 0.2168 16 1 11.2821 6.6942 -0.0592 17 1 10.0336 8.7651 -0.2423 18 1 9.7072 7.3181 1.6760 19 6 5.4140 2.7376 -0.7235 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.5791 3.6716 1.9304 28 1 4.7739 2.3346 2.0266 29 1 6.2137 4.2687 2.0530 30 1 5.1658 5.1684 0.9153 31 1 7.2647 4.2420 -1.7322 32 1 6.0678 5.3842 -1.0756 33 1 8.7618 7.5509 -2.3436 34 1 5.8153 1.7243 -0.7437 35 1 5.2975 3.1105 -1.7411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701708437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:22 Heat of formation + Delta-G solvation = -76.263430 kcal Electronic energy + Delta-G solvation = -14274.953906 eV Core-core repulsion = 11885.615288 eV Total energy + Delta-G solvation = -2389.338618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31374 -38.16155 -35.14628 -34.36841 -31.98949 -29.75612 -28.15829 -26.63076 -24.49967 -22.49504 -22.03632 -21.56535 -18.64471 -17.90958 -17.14037 -16.72340 -16.29437 -15.58228 -15.23657 -14.82352 -14.63547 -14.33048 -13.87528 -13.63555 -13.15219 -12.98121 -12.94218 -12.67897 -12.59196 -12.42941 -12.22709 -11.92137 -11.80450 -11.70528 -11.58348 -11.30458 -10.64075 -10.45075 -9.07142 -8.22281 -6.33059 1.41108 1.43164 1.54292 2.39239 2.60184 3.10207 3.31240 3.64733 3.81763 3.97773 4.05668 4.17466 4.35974 4.40625 4.47960 4.61038 4.65249 4.67327 4.86241 4.90041 4.92600 4.98578 5.07047 5.15251 5.16326 5.24610 5.25190 5.38670 5.63852 6.00549 6.24521 6.30071 6.52429 6.82619 7.37157 8.89152 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.086699 B = 0.005165 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.877781 B = 5419.787638 C = 5567.664897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.052 3.948 4 O -0.391 6.391 5 C 0.079 3.921 6 H 0.072 0.928 7 C -0.134 4.134 8 C 0.055 3.945 9 N -0.537 5.537 10 C 0.202 3.798 11 C -0.526 4.526 12 H 0.062 0.938 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.973 3.027 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.042 3.958 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.002 0.998 32 H -0.032 1.032 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 -9.413 5.339 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.024 4.024 4 O -0.310 6.310 5 C 0.020 3.980 6 H 0.090 0.910 7 C -0.172 4.172 8 C -0.072 4.072 9 N -0.263 5.263 10 C 0.076 3.924 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.797 3.203 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.086 4.086 20 H 0.090 0.910 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.020 0.980 32 H -0.014 1.014 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.555 -9.753 5.379 17.544 hybrid contribution 0.107 1.376 -0.449 1.452 sum -13.449 -8.377 4.930 16.594 Atomic orbital electron populations 1.21680 0.93170 1.02962 1.02454 1.21474 0.96949 0.94515 1.02955 1.22827 0.79850 0.99018 1.00704 1.87883 1.21038 1.27029 1.95029 1.23226 0.93996 0.84772 0.95961 0.90960 1.23128 0.98090 0.99264 0.96762 1.22799 0.94079 0.95874 0.94469 1.63601 1.32593 1.20267 1.09800 1.19620 0.93429 0.87541 0.91814 1.21446 1.18346 1.15140 1.01526 0.91981 1.25947 0.99997 0.97913 0.95824 1.70084 1.43330 1.29516 1.14616 0.85332 0.78709 0.77335 0.78936 1.19868 1.20564 1.18742 1.22823 0.91288 0.98637 0.95892 0.91049 0.91963 0.92247 0.91729 0.91369 0.92419 0.93089 0.88708 0.89822 0.90941 0.94976 0.98022 1.01398 0.92580 0.90481 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -2.18 6.30 30.60 0.19 -1.99 16 3 C 0.05 1.14 5.78 71.98 0.42 1.55 16 4 O -0.39 -11.50 10.07 -148.98 -1.50 -13.00 16 5 C 0.08 2.52 3.44 31.77 0.11 2.63 16 6 H 0.07 2.16 7.82 -2.39 -0.02 2.15 16 7 C -0.13 -4.07 6.80 31.98 0.22 -3.86 16 8 C 0.06 2.19 6.14 86.78 0.53 2.72 16 9 N -0.54 -24.76 5.15 -890.08 -4.59 -29.35 16 10 C 0.20 11.23 4.33 85.56 0.37 11.60 16 11 C -0.53 -30.72 8.80 25.60 0.23 -30.50 16 12 H 0.06 3.56 7.76 -2.91 -0.02 3.53 16 13 C 0.00 0.07 5.46 84.66 0.46 0.53 16 14 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 15 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 C 0.04 1.65 6.63 86.65 0.57 2.22 16 20 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 21 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.05 8.11 -2.39 -0.02 1.04 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.03 1.34 7.62 -2.38 -0.02 1.32 16 31 H 0.00 0.10 8.03 -2.38 -0.02 0.08 16 32 H -0.03 -1.86 7.85 -2.39 -0.02 -1.88 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.08 2.99 8.06 -2.38 -0.02 2.97 16 35 H 0.04 1.76 7.56 -2.38 -0.02 1.75 16 Total: -1.00 -65.17 287.37 1.06 -64.11 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.02 Total: 4.45 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.81 Total: -16.26 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -4.30 Total: -86.14 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.50 Total: -13.00 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.17 1.06 -64.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701708437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.153 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds