Wall clock time and date at job start Mon Mar 30 2020 04:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.42898 * 114.00068 * 270.00142 * 4 2 1 6 6 H 1.08999 * 110.28680 * 330.69689 * 5 4 2 7 7 C 1.54263 * 110.32803 * 92.82524 * 5 4 2 8 8 C 1.54379 * 105.06007 * 118.89927 * 7 5 4 9 9 N 1.48561 * 104.59782 * 23.84841 * 8 7 5 10 10 C 1.46893 * 111.00379 * 200.95961 * 9 8 7 11 11 C 1.50702 * 109.47307 * 290.13092 * 10 9 8 12 12 H 1.08006 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00162 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00121 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00190 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46989 * 90.00551 * 15 13 11 17 17 H 1.48503 * 109.47385 * 210.00732 * 15 13 11 18 18 H 1.48504 * 109.46986 * 330.00731 * 15 13 11 19 19 C 1.48718 * 104.29113 * 320.57892 * 9 8 7 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.08998 * 110.32201 * 237.79135 * 7 5 4 28 28 H 1.08997 * 110.31820 * 359.97438 * 7 5 4 29 29 H 1.08990 * 110.41200 * 142.63555 * 8 7 5 30 30 H 1.09005 * 110.40738 * 265.07354 * 8 7 5 31 31 H 1.09002 * 109.46753 * 50.12842 * 10 9 8 32 32 H 1.08990 * 109.47450 * 170.12786 * 10 9 8 33 33 H 0.96997 * 120.00605 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.38754 * 280.64218 * 19 9 8 35 35 H 1.08992 * 110.51001 * 158.14316 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 -2.0781 -0.9887 6 1 2.4516 -2.2963 0.0492 7 6 0.9323 -2.8512 -1.4067 8 6 1.3838 -3.7650 -2.5662 9 7 2.8458 -3.9329 -2.3631 10 6 3.5068 -4.3431 -3.6091 11 6 3.1103 -5.7575 -3.9461 12 1 2.4351 -6.2978 -3.2990 13 6 3.6094 -6.3617 -5.0804 14 7 4.4320 -5.7040 -5.8681 15 14 3.1185 -8.1151 -5.4977 16 1 1.8984 -8.0993 -6.3440 17 1 4.2244 -8.7765 -6.2359 18 1 2.8424 -8.8633 -4.2450 19 6 3.3128 -2.5894 -1.9289 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 0.5626 -3.4502 -0.5745 28 1 0.1621 -2.1592 -1.7473 29 1 0.8787 -4.7292 -2.5090 30 1 1.1857 -3.2874 -3.5258 31 1 3.2028 -3.6782 -4.4175 32 1 4.5879 -4.2895 -3.4816 33 1 4.7835 -6.1292 -6.6659 34 1 3.4177 -1.9277 -2.7887 35 1 4.2578 -2.6688 -1.3916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701730509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:27 Heat of formation + Delta-G solvation = -53.056996 kcal Electronic energy + Delta-G solvation = -14548.201964 eV Core-core repulsion = 12159.869652 eV Total energy + Delta-G solvation = -2388.332312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04483 -36.84255 -33.15763 -32.29153 -30.23440 -27.96097 -27.27910 -25.97137 -22.53566 -21.42025 -20.43249 -20.02910 -16.75726 -16.08157 -15.73712 -14.96844 -14.57344 -14.25163 -13.63491 -13.35650 -12.87674 -12.65224 -12.35769 -12.31850 -12.11788 -11.78283 -11.50363 -11.14195 -10.97779 -10.84317 -10.66646 -10.57868 -10.40216 -10.12204 -9.82636 -9.35692 -9.12615 -8.41786 -7.40175 -6.00687 -4.02144 3.33483 3.39324 3.43942 3.75758 4.45494 4.85074 4.96092 5.09228 5.14998 5.18145 5.28857 5.35230 5.45353 5.49736 5.64323 5.72344 5.75311 5.83794 6.05989 6.10474 6.18633 6.23938 6.31619 6.42452 6.60726 6.66224 7.13256 7.32934 7.52289 7.78384 8.00765 8.18154 8.51432 9.05373 9.61992 11.10571 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.072213 B = 0.005852 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.649486 B = 4783.942678 C = 5016.854509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.375 6.375 5 C 0.086 3.914 6 H 0.065 0.935 7 C -0.148 4.148 8 C 0.049 3.951 9 N -0.507 5.507 10 C 0.182 3.818 11 C -0.507 4.507 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.034 3.966 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.038 0.962 31 H -0.005 1.005 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.048 0.952 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 10.464 11.135 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.294 6.294 5 C 0.028 3.972 6 H 0.083 0.917 7 C -0.186 4.186 8 C -0.080 4.080 9 N -0.232 5.232 10 C 0.057 3.943 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.095 4.095 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.013 0.987 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.145 10.118 11.179 16.282 hybrid contribution -0.425 -0.464 -0.793 1.012 sum -6.570 9.655 10.386 15.629 Atomic orbital electron populations 1.22380 0.96326 1.02571 1.02089 1.22107 0.93562 0.93696 0.88433 1.21866 1.01803 0.94864 1.02152 1.87975 1.85990 1.20431 1.35044 1.22992 0.95354 0.79851 0.99005 0.91659 1.22953 0.97605 0.98591 0.99490 1.22853 0.90936 0.98617 0.95582 1.65540 1.02849 1.20766 1.34087 1.19890 0.94722 0.95929 0.83776 1.21124 1.27927 0.98035 1.07432 0.91921 1.24994 0.95187 0.98236 0.96220 1.69961 1.32191 1.37316 1.14400 0.86486 0.77988 0.84448 0.78430 1.20743 1.21239 1.19761 1.23104 0.96663 0.91871 0.97846 0.92095 0.92172 0.91948 0.92423 0.91921 0.91631 0.92034 0.91469 0.91055 0.90455 0.94325 0.98720 0.95067 0.92917 0.93408 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.15 37.16 0.34 -1.49 16 2 C 0.08 0.94 3.34 -26.73 -0.09 0.85 16 3 C -0.15 -1.48 9.56 37.16 0.36 -1.13 16 4 O -0.38 -5.81 9.60 -35.23 -0.34 -6.15 16 5 C 0.09 1.39 3.52 -25.34 -0.09 1.30 16 6 H 0.07 0.95 7.41 -51.93 -0.38 0.57 16 7 C -0.15 -2.38 5.87 -25.35 -0.15 -2.53 16 8 C 0.05 0.98 5.97 -2.18 -0.01 0.97 16 9 N -0.51 -11.49 5.36 -231.28 -1.24 -12.73 16 10 C 0.18 4.94 4.57 -4.98 -0.02 4.91 16 11 C -0.51 -14.60 8.82 -34.44 -0.30 -14.90 16 12 H 0.06 1.78 7.61 -52.48 -0.40 1.38 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 15 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.03 0.65 6.25 -2.09 -0.01 0.64 16 20 H 0.06 0.66 6.69 -51.93 -0.35 0.31 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.63 7.39 -51.93 -0.38 0.24 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.08 7.12 -51.93 -0.37 0.71 16 29 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 30 H 0.04 0.83 7.82 -51.93 -0.41 0.42 16 31 H -0.01 -0.14 7.88 -51.93 -0.41 -0.55 16 32 H 0.03 0.90 8.13 -51.93 -0.42 0.47 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.05 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 282.83 15.07 4.26 4.26 Total: -1.00 -30.60 282.83 -7.72 -38.32 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -6.04 Total: -4.24 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.08 Total: -9.89 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.50 Total: -39.21 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.34 Total: -6.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.60 -7.72 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701730509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.737 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds