Wall clock time and date at job start Mon Mar 30 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.42898 * 114.00068 * 270.00142 * 4 2 1 6 6 H 1.08999 * 110.28680 * 330.69689 * 5 4 2 7 7 C 1.54263 * 110.32803 * 92.82524 * 5 4 2 8 8 C 1.54379 * 105.06007 * 118.89927 * 7 5 4 9 9 N 1.48561 * 104.59782 * 23.84841 * 8 7 5 10 10 C 1.46893 * 111.00379 * 200.95961 * 9 8 7 11 11 C 1.50702 * 109.47307 * 290.13092 * 10 9 8 12 12 H 1.08006 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00162 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00121 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00190 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46989 * 90.00551 * 15 13 11 17 17 H 1.48503 * 109.47385 * 210.00732 * 15 13 11 18 18 H 1.48504 * 109.46986 * 330.00731 * 15 13 11 19 19 C 1.48718 * 104.29113 * 320.57892 * 9 8 7 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.08998 * 110.32201 * 237.79135 * 7 5 4 28 28 H 1.08997 * 110.31820 * 359.97438 * 7 5 4 29 29 H 1.08990 * 110.41200 * 142.63555 * 8 7 5 30 30 H 1.09005 * 110.40738 * 265.07354 * 8 7 5 31 31 H 1.09002 * 109.46753 * 50.12842 * 10 9 8 32 32 H 1.08990 * 109.47450 * 170.12786 * 10 9 8 33 33 H 0.96997 * 120.00605 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.38754 * 280.64218 * 19 9 8 35 35 H 1.08992 * 110.51001 * 158.14316 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 -2.0781 -0.9887 6 1 2.4516 -2.2963 0.0492 7 6 0.9323 -2.8512 -1.4067 8 6 1.3838 -3.7650 -2.5662 9 7 2.8458 -3.9329 -2.3631 10 6 3.5068 -4.3431 -3.6091 11 6 3.1103 -5.7575 -3.9461 12 1 2.4351 -6.2978 -3.2990 13 6 3.6094 -6.3617 -5.0804 14 7 4.4320 -5.7040 -5.8681 15 14 3.1185 -8.1151 -5.4977 16 1 1.8984 -8.0993 -6.3440 17 1 4.2244 -8.7765 -6.2359 18 1 2.8424 -8.8633 -4.2450 19 6 3.3128 -2.5894 -1.9289 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 0.5626 -3.4502 -0.5745 28 1 0.1621 -2.1592 -1.7473 29 1 0.8787 -4.7292 -2.5090 30 1 1.1857 -3.2874 -3.5258 31 1 3.2028 -3.6782 -4.4175 32 1 4.5879 -4.2895 -3.4816 33 1 4.7835 -6.1292 -6.6659 34 1 3.4177 -1.9277 -2.7887 35 1 4.2578 -2.6688 -1.3916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701730509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:26 Heat of formation + Delta-G solvation = -74.104449 kcal Electronic energy + Delta-G solvation = -14549.114650 eV Core-core repulsion = 12159.869652 eV Total energy + Delta-G solvation = -2389.244998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38569 -38.26280 -35.09864 -33.56981 -31.88037 -29.56993 -28.21582 -27.76702 -24.51418 -22.39239 -21.88424 -21.66874 -18.56804 -17.68712 -17.16987 -16.54368 -16.03768 -15.55592 -15.25022 -14.83018 -14.45961 -13.97908 -13.88728 -13.48869 -13.21948 -13.06858 -12.93063 -12.84964 -12.61560 -12.36663 -12.23124 -12.01561 -11.84322 -11.65352 -11.46742 -11.25420 -10.64940 -10.46305 -9.29376 -8.23236 -6.34453 1.40471 1.42604 1.54503 2.38484 2.63492 3.09493 3.48832 3.70771 3.80222 4.05798 4.09394 4.21110 4.33817 4.36940 4.57191 4.68482 4.78367 4.82427 4.85091 4.92577 4.95598 5.00197 5.02226 5.08081 5.15842 5.25332 5.32619 5.37989 5.60094 5.92648 6.13668 6.40173 6.47269 6.80704 7.35667 8.88812 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.072213 B = 0.005852 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.649486 B = 4783.942678 C = 5016.854509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 C -0.148 4.148 4 O -0.396 6.396 5 C 0.098 3.902 6 H 0.090 0.910 7 C -0.134 4.134 8 C 0.045 3.955 9 N -0.514 5.514 10 C 0.198 3.802 11 C -0.526 4.526 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.975 3.025 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.029 3.971 20 H 0.057 0.943 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.017 0.983 31 H -0.038 1.038 32 H 0.004 0.996 33 H 0.266 0.734 34 H 0.027 0.973 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 10.212 12.877 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.315 6.315 5 C 0.040 3.960 6 H 0.108 0.892 7 C -0.172 4.172 8 C -0.084 4.084 9 N -0.239 5.239 10 C 0.071 3.929 11 C -0.564 4.564 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.799 3.201 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.100 4.100 20 H 0.076 0.924 21 H 0.103 0.897 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.035 0.965 31 H -0.020 1.020 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.480 9.887 12.943 17.923 hybrid contribution 0.005 -0.287 -1.313 1.344 sum -7.474 9.600 11.631 16.832 Atomic orbital electron populations 1.22356 0.95147 1.02652 1.02924 1.22440 0.94575 0.94244 0.87536 1.21886 1.01501 0.93995 1.03112 1.87960 1.86395 1.19852 1.37342 1.22796 0.93679 0.80566 0.98983 0.89220 1.22898 0.97859 0.98090 0.98334 1.22901 0.89455 0.99366 0.96644 1.65426 1.04202 1.23062 1.31229 1.19536 0.93388 0.95165 0.84816 1.21422 1.28258 0.98792 1.07971 0.91774 1.25985 0.94830 1.03112 0.95850 1.70096 1.33164 1.39473 1.14919 0.85303 0.77904 0.78409 0.78518 1.19717 1.20565 1.18677 1.23184 0.98732 0.90023 0.98028 0.92374 0.89744 0.92753 0.91043 0.92672 0.88959 0.92575 0.88940 0.89814 0.90839 0.96484 1.02030 0.97791 0.92568 0.95476 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.15 71.98 0.66 -2.42 16 2 C 0.07 1.44 3.34 30.59 0.10 1.54 16 3 C -0.15 -2.60 9.56 71.98 0.69 -1.91 16 4 O -0.40 -11.65 9.60 -148.98 -1.43 -13.08 16 5 C 0.10 2.99 3.52 31.49 0.11 3.10 16 6 H 0.09 2.33 7.41 -2.39 -0.02 2.31 16 7 C -0.13 -4.04 5.87 31.49 0.19 -3.85 16 8 C 0.04 1.81 5.97 86.45 0.52 2.33 16 9 N -0.51 -23.76 5.36 -885.63 -4.75 -28.51 16 10 C 0.20 11.19 4.57 85.56 0.39 11.58 16 11 C -0.53 -30.95 8.82 25.60 0.23 -30.73 16 12 H 0.06 3.67 7.61 -2.91 -0.02 3.65 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 15 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 C 0.03 1.13 6.25 86.42 0.54 1.67 16 20 H 0.06 1.06 6.69 -2.39 -0.02 1.05 16 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.30 7.39 -2.39 -0.02 1.28 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.34 7.12 -2.39 -0.02 2.33 16 29 H 0.07 3.00 7.94 -2.39 -0.02 2.98 16 30 H 0.02 0.75 7.82 -2.38 -0.02 0.73 16 31 H -0.04 -2.34 7.88 -2.39 -0.02 -2.36 16 32 H 0.00 0.24 8.13 -2.39 -0.02 0.22 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.03 1.16 7.94 -2.39 -0.02 1.14 16 35 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -67.03 282.83 1.04 -65.99 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.03 Total: 4.43 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.88 Total: -18.22 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -4.46 Total: -86.16 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.43 Total: -13.08 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.03 1.04 -65.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701730509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.119 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds